Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
NPHP1O15259 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC30.03■■■□□ 2.4
NPHP1O15259 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
NPHP1O15259 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC30.03■■■□□ 2.4
NPHP1O15259 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC30.03■■■□□ 2.4
NPHP1O15259 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC30.02■■■□□ 2.4
NPHP1O15259 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC30.02■■■□□ 2.4
NPHP1O15259 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC30.02■■■□□ 2.4
NPHP1O15259 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC30.02■■■□□ 2.4
NPHP1O15259 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC30.02■■■□□ 2.4
NPHP1O15259 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
NPHP1O15259 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
NPHP1O15259 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC30.01■■■□□ 2.39
NPHP1O15259 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
NPHP1O15259 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
NPHP1O15259 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
NPHP1O15259 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC30■■■□□ 2.39
NPHP1O15259 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC30■■■□□ 2.39
NPHP1O15259 AP004609.3-201ENST00000610705 1884 ntBASIC30■■■□□ 2.39
NPHP1O15259 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
NPHP1O15259 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC29.99■■■□□ 2.39
NPHP1O15259 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
NPHP1O15259 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC29.99■■■□□ 2.39
NPHP1O15259 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC29.98■■■□□ 2.39
NPHP1O15259 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC29.98■■■□□ 2.39
NPHP1O15259 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
NPHP1O15259 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
NPHP1O15259 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
NPHP1O15259 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
NPHP1O15259 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC29.97■■■□□ 2.39
NPHP1O15259 AL117332.1-201ENST00000622628 974 ntBASIC29.97■■■□□ 2.39
NPHP1O15259 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
NPHP1O15259 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC29.96■■■□□ 2.39
NPHP1O15259 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC29.96■■■□□ 2.39
NPHP1O15259 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC29.96■■■□□ 2.39
NPHP1O15259 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
NPHP1O15259 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC29.96■■■□□ 2.39
NPHP1O15259 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
NPHP1O15259 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC29.95■■■□□ 2.39
NPHP1O15259 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC29.95■■■□□ 2.39
NPHP1O15259 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC29.95■■■□□ 2.39
NPHP1O15259 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC29.95■■■□□ 2.39
NPHP1O15259 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC29.95■■■□□ 2.39
NPHP1O15259 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC29.95■■■□□ 2.39
NPHP1O15259 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC29.95■■■□□ 2.39
NPHP1O15259 MIR6724-1-201ENST00000616420 92 ntBASIC29.95■■■□□ 2.39
NPHP1O15259 MIR6724-2-201ENST00000616483 92 ntBASIC29.95■■■□□ 2.39
NPHP1O15259 MIR6724-4-201ENST00000617390 92 ntBASIC29.95■■■□□ 2.39
NPHP1O15259 MIR6724-3-201ENST00000622482 92 ntBASIC29.95■■■□□ 2.39
NPHP1O15259 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC29.95■■■□□ 2.38
NPHP1O15259 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC29.95■■■□□ 2.38
NPHP1O15259 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC29.94■■■□□ 2.38
NPHP1O15259 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC29.94■■■□□ 2.38
NPHP1O15259 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC29.94■■■□□ 2.38
NPHP1O15259 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC29.94■■■□□ 2.38
NPHP1O15259 AL356740.2-201ENST00000601559 647 ntBASIC29.94■■■□□ 2.38
NPHP1O15259 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC29.94■■■□□ 2.38
NPHP1O15259 GAK-223ENST00000628912 497 ntTSL 5 BASIC29.94■■■□□ 2.38
NPHP1O15259 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
NPHP1O15259 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC29.93■■■□□ 2.38
NPHP1O15259 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC29.93■■■□□ 2.38
NPHP1O15259 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC29.93■■■□□ 2.38
NPHP1O15259 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
NPHP1O15259 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC29.93■■■□□ 2.38
NPHP1O15259 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC29.93■■■□□ 2.38
NPHP1O15259 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
NPHP1O15259 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC29.92■■■□□ 2.38
NPHP1O15259 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC29.92■■■□□ 2.38
NPHP1O15259 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC29.92■■■□□ 2.38
NPHP1O15259 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
NPHP1O15259 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC29.91■■■□□ 2.38
NPHP1O15259 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC29.91■■■□□ 2.38
NPHP1O15259 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC29.91■■■□□ 2.38
NPHP1O15259 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC29.91■■■□□ 2.38
NPHP1O15259 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC29.91■■■□□ 2.38
NPHP1O15259 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC29.9■■■□□ 2.38
NPHP1O15259 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC29.9■■■□□ 2.38
NPHP1O15259 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC29.9■■■□□ 2.38
NPHP1O15259 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
NPHP1O15259 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
NPHP1O15259 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
NPHP1O15259 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC29.89■■■□□ 2.38
NPHP1O15259 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC29.89■■■□□ 2.38
NPHP1O15259 AK3-203ENST00000447596 705 ntTSL 2 BASIC29.89■■■□□ 2.38
NPHP1O15259 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC29.89■■■□□ 2.38
NPHP1O15259 MIR3621-201ENST00000580529 85 ntBASIC29.89■■■□□ 2.38
NPHP1O15259 AC011551.1-201ENST00000614101 683 ntBASIC29.89■■■□□ 2.38
NPHP1O15259 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
NPHP1O15259 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC29.88■■■□□ 2.37
NPHP1O15259 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC29.88■■■□□ 2.37
NPHP1O15259 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC29.88■■■□□ 2.37
NPHP1O15259 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC29.88■■■□□ 2.37
NPHP1O15259 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC29.88■■■□□ 2.37
NPHP1O15259 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
NPHP1O15259 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
NPHP1O15259 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC29.87■■■□□ 2.37
NPHP1O15259 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
NPHP1O15259 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC29.86■■■□□ 2.37
NPHP1O15259 LSM4-201ENST00000252816 986 ntTSL 2 BASIC29.86■■■□□ 2.37
NPHP1O15259 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC29.86■■■□□ 2.37
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms