Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL6A6A6NMZ7 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL6A6A6NMZ7 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL6A6A6NMZ7 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.77■■□□□ 1.08
COL6A6A6NMZ7 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL6A6A6NMZ7 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.77■■□□□ 1.08
COL6A6A6NMZ7 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL6A6A6NMZ7 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
COL6A6A6NMZ7 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC21.77■■□□□ 1.08
COL6A6A6NMZ7 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL6A6A6NMZ7 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.77■■□□□ 1.08
COL6A6A6NMZ7 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL6A6A6NMZ7 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.07
COL6A6A6NMZ7 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
COL6A6A6NMZ7 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL6A6A6NMZ7 AP001330.3-201ENST00000520123 633 ntBASIC21.76■■□□□ 1.07
COL6A6A6NMZ7 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL6A6A6NMZ7 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
COL6A6A6NMZ7 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL6A6A6NMZ7 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL6A6A6NMZ7 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.76■■□□□ 1.07
COL6A6A6NMZ7 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.76■■□□□ 1.07
COL6A6A6NMZ7 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
COL6A6A6NMZ7 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL6A6A6NMZ7 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL6A6A6NMZ7 MIR939-201ENST00000401314 82 ntBASIC21.75■■□□□ 1.07
COL6A6A6NMZ7 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL6A6A6NMZ7 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.75■■□□□ 1.07
COL6A6A6NMZ7 AC034268.1-201ENST00000441047 882 ntBASIC21.75■■□□□ 1.07
COL6A6A6NMZ7 AL136162.1-201ENST00000607711 1078 ntBASIC21.75■■□□□ 1.07
COL6A6A6NMZ7 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL6A6A6NMZ7 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL6A6A6NMZ7 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL6A6A6NMZ7 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL6A6A6NMZ7 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC21.74■■□□□ 1.07
COL6A6A6NMZ7 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC21.74■■□□□ 1.07
COL6A6A6NMZ7 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL6A6A6NMZ7 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.73■■□□□ 1.07
COL6A6A6NMZ7 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL6A6A6NMZ7 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL6A6A6NMZ7 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.73■■□□□ 1.07
COL6A6A6NMZ7 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL6A6A6NMZ7 AC011551.1-201ENST00000614101 683 ntBASIC21.73■■□□□ 1.07
COL6A6A6NMZ7 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
COL6A6A6NMZ7 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
COL6A6A6NMZ7 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL6A6A6NMZ7 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL6A6A6NMZ7 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
COL6A6A6NMZ7 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL6A6A6NMZ7 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
COL6A6A6NMZ7 AL136967.2-201ENST00000623968 743 ntBASIC21.72■■□□□ 1.07
COL6A6A6NMZ7 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
COL6A6A6NMZ7 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL6A6A6NMZ7 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL6A6A6NMZ7 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
COL6A6A6NMZ7 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL6A6A6NMZ7 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
COL6A6A6NMZ7 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
COL6A6A6NMZ7 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.71■■□□□ 1.07
COL6A6A6NMZ7 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.7■■□□□ 1.06
COL6A6A6NMZ7 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC21.7■■□□□ 1.06
COL6A6A6NMZ7 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC21.7■■□□□ 1.06
COL6A6A6NMZ7 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL6A6A6NMZ7 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.69■■□□□ 1.06
COL6A6A6NMZ7 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
COL6A6A6NMZ7 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL6A6A6NMZ7 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.69■■□□□ 1.06
COL6A6A6NMZ7 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL6A6A6NMZ7 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.69■■□□□ 1.06
COL6A6A6NMZ7 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.69■■□□□ 1.06
COL6A6A6NMZ7 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL6A6A6NMZ7 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC21.68■■□□□ 1.06
COL6A6A6NMZ7 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.68■■□□□ 1.06
COL6A6A6NMZ7 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL6A6A6NMZ7 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.68■■□□□ 1.06
COL6A6A6NMZ7 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC21.68■■□□□ 1.06
COL6A6A6NMZ7 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL6A6A6NMZ7 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.68■■□□□ 1.06
COL6A6A6NMZ7 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.68■■□□□ 1.06
COL6A6A6NMZ7 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL6A6A6NMZ7 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC21.67■■□□□ 1.06
COL6A6A6NMZ7 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC21.67■■□□□ 1.06
COL6A6A6NMZ7 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
COL6A6A6NMZ7 ID1-201ENST00000376105 1233 ntBASIC21.67■■□□□ 1.06
COL6A6A6NMZ7 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.67■■□□□ 1.06
COL6A6A6NMZ7 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL6A6A6NMZ7 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL6A6A6NMZ7 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL6A6A6NMZ7 AC091305.1-201ENST00000479476 895 ntBASIC21.66■■□□□ 1.06
COL6A6A6NMZ7 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.66■■□□□ 1.06
COL6A6A6NMZ7 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
COL6A6A6NMZ7 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.66■■□□□ 1.06
COL6A6A6NMZ7 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL6A6A6NMZ7 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC21.65■■□□□ 1.06
COL6A6A6NMZ7 IKBKGP1-201ENST00000612193 1073 ntBASIC21.65■■□□□ 1.06
COL6A6A6NMZ7 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL6A6A6NMZ7 RASA4CP-201ENST00000424092 1398 ntBASIC21.64■■□□□ 1.06
COL6A6A6NMZ7 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
COL6A6A6NMZ7 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
COL6A6A6NMZ7 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 8.7 ms