Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV1-1A0A0B4J248 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV1-1A0A0B4J248 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TRAV1-1A0A0B4J248 RPS2-209ENST00000529806 993 ntTSL 3 BASIC18.61■□□□□ 0.57
TRAV1-1A0A0B4J248 SETD8P1-201ENST00000623146 1180 ntBASIC18.61■□□□□ 0.57
TRAV1-1A0A0B4J248 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRAV1-1A0A0B4J248 C9orf163-202ENST00000624034 2573 ntBASIC18.61■□□□□ 0.57
TRAV1-1A0A0B4J248 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TRAV1-1A0A0B4J248 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC18.61■□□□□ 0.57
TRAV1-1A0A0B4J248 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV1-1A0A0B4J248 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV1-1A0A0B4J248 AC108673.1-201ENST00000510422 1159 ntBASIC18.6■□□□□ 0.57
TRAV1-1A0A0B4J248 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.6■□□□□ 0.57
TRAV1-1A0A0B4J248 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
TRAV1-1A0A0B4J248 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC18.6■□□□□ 0.57
TRAV1-1A0A0B4J248 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV1-1A0A0B4J248 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRAV1-1A0A0B4J248 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC18.6■□□□□ 0.57
TRAV1-1A0A0B4J248 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
TRAV1-1A0A0B4J248 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV1-1A0A0B4J248 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV1-1A0A0B4J248 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV1-1A0A0B4J248 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC18.59■□□□□ 0.57
TRAV1-1A0A0B4J248 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV1-1A0A0B4J248 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV1-1A0A0B4J248 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRAV1-1A0A0B4J248 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
TRAV1-1A0A0B4J248 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC18.58■□□□□ 0.57
TRAV1-1A0A0B4J248 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TRAV1-1A0A0B4J248 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRAV1-1A0A0B4J248 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TRAV1-1A0A0B4J248 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC18.58■□□□□ 0.56
TRAV1-1A0A0B4J248 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC18.57■□□□□ 0.56
TRAV1-1A0A0B4J248 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV1-1A0A0B4J248 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV1-1A0A0B4J248 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRAV1-1A0A0B4J248 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
TRAV1-1A0A0B4J248 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV1-1A0A0B4J248 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
TRAV1-1A0A0B4J248 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRAV1-1A0A0B4J248 ABCB10P4-201ENST00000566803 2184 ntBASIC18.56■□□□□ 0.56
TRAV1-1A0A0B4J248 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
TRAV1-1A0A0B4J248 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
TRAV1-1A0A0B4J248 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV1-1A0A0B4J248 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
TRAV1-1A0A0B4J248 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
TRAV1-1A0A0B4J248 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV1-1A0A0B4J248 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV1-1A0A0B4J248 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC18.55■□□□□ 0.56
TRAV1-1A0A0B4J248 CALM3-209ENST00000597743 577 ntTSL 4 BASIC18.55■□□□□ 0.56
TRAV1-1A0A0B4J248 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC18.55■□□□□ 0.56
TRAV1-1A0A0B4J248 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRAV1-1A0A0B4J248 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
TRAV1-1A0A0B4J248 GALC-202ENST00000393568 2054 ntTSL 2 BASIC18.54■□□□□ 0.56
TRAV1-1A0A0B4J248 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV1-1A0A0B4J248 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV1-1A0A0B4J248 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.54■□□□□ 0.56
TRAV1-1A0A0B4J248 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRAV1-1A0A0B4J248 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC18.54■□□□□ 0.56
TRAV1-1A0A0B4J248 LINC00565-201ENST00000562710 2331 ntBASIC18.54■□□□□ 0.56
TRAV1-1A0A0B4J248 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV1-1A0A0B4J248 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV1-1A0A0B4J248 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV1-1A0A0B4J248 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV1-1A0A0B4J248 CAHM-201ENST00000604200 896 ntBASIC18.53■□□□□ 0.56
TRAV1-1A0A0B4J248 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV1-1A0A0B4J248 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV1-1A0A0B4J248 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV1-1A0A0B4J248 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRAV1-1A0A0B4J248 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC18.53■□□□□ 0.56
TRAV1-1A0A0B4J248 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
TRAV1-1A0A0B4J248 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
TRAV1-1A0A0B4J248 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC18.52■□□□□ 0.56
TRAV1-1A0A0B4J248 SHD-204ENST00000599689 1729 ntTSL 5 BASIC18.52■□□□□ 0.56
TRAV1-1A0A0B4J248 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC18.52■□□□□ 0.56
TRAV1-1A0A0B4J248 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC18.52■□□□□ 0.56
TRAV1-1A0A0B4J248 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRAV1-1A0A0B4J248 MIR762-201ENST00000390236 83 ntBASIC18.52■□□□□ 0.56
TRAV1-1A0A0B4J248 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC18.52■□□□□ 0.56
TRAV1-1A0A0B4J248 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC18.52■□□□□ 0.56
TRAV1-1A0A0B4J248 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC18.52■□□□□ 0.55
TRAV1-1A0A0B4J248 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TRAV1-1A0A0B4J248 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
TRAV1-1A0A0B4J248 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
TRAV1-1A0A0B4J248 RARRES2P7-201ENST00000567349 469 ntBASIC18.51■□□□□ 0.55
TRAV1-1A0A0B4J248 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAV1-1A0A0B4J248 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRAV1-1A0A0B4J248 AC233723.2-201ENST00000623798 2106 ntBASIC18.5■□□□□ 0.55
TRAV1-1A0A0B4J248 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
TRAV1-1A0A0B4J248 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRAV1-1A0A0B4J248 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAV1-1A0A0B4J248 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAV1-1A0A0B4J248 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC18.5■□□□□ 0.55
TRAV1-1A0A0B4J248 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.5■□□□□ 0.55
TRAV1-1A0A0B4J248 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAV1-1A0A0B4J248 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAV1-1A0A0B4J248 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
TRAV1-1A0A0B4J248 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
TRAV1-1A0A0B4J248 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
TRAV1-1A0A0B4J248 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms