Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HIF3AQ9Y2N7 REXO1L8P-201ENST00000604378 1897 ntBASIC14.9□□□□□ -0.02
HIF3AQ9Y2N7 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC14.9□□□□□ -0.02
HIF3AQ9Y2N7 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HIF3AQ9Y2N7 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HIF3AQ9Y2N7 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HIF3AQ9Y2N7 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC14.9□□□□□ -0.02
HIF3AQ9Y2N7 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC14.9□□□□□ -0.02
HIF3AQ9Y2N7 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HIF3AQ9Y2N7 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC14.9□□□□□ -0.02
HIF3AQ9Y2N7 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
HIF3AQ9Y2N7 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HIF3AQ9Y2N7 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HIF3AQ9Y2N7 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.9□□□□□ -0.02
HIF3AQ9Y2N7 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 AC098831.1-202ENST00000438821 336 ntBASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 AL049840.3-201ENST00000602669 611 ntBASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 AC021097.1-201ENST00000607902 574 ntBASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.89□□□□□ -0.03
HIF3AQ9Y2N7 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 AC007950.2-201ENST00000615045 2347 ntBASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 HMGA1P7-201ENST00000406908 502 ntBASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 POLD4-207ENST00000531239 584 ntTSL 2 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 AL031432.2-201ENST00000566714 459 ntBASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 AL928711.1-201ENST00000570165 459 ntBASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 AL031055.1-201ENST00000606362 631 ntBASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.88□□□□□ -0.03
HIF3AQ9Y2N7 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HIF3AQ9Y2N7 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms