Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
CPNE4Q96A23 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC14.81□□□□□ -0.04
CPNE4Q96A23 GGT4P-201ENST00000623672 1708 ntBASIC14.81□□□□□ -0.04
CPNE4Q96A23 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
CPNE4Q96A23 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC14.81□□□□□ -0.04
CPNE4Q96A23 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
CPNE4Q96A23 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 RPS8P6-201ENST00000426177 609 ntBASIC14.81□□□□□ -0.04
CPNE4Q96A23 CNN2P11-201ENST00000429351 262 ntBASIC14.81□□□□□ -0.04
CPNE4Q96A23 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 AC079140.1-201ENST00000508039 487 ntBASIC14.81□□□□□ -0.04
CPNE4Q96A23 KRT8P48-201ENST00000515599 1220 ntBASIC14.81□□□□□ -0.04
CPNE4Q96A23 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC14.81□□□□□ -0.04
CPNE4Q96A23 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
CPNE4Q96A23 KRT8P23-201ENST00000560090 1207 ntBASIC14.81□□□□□ -0.04
CPNE4Q96A23 AC243562.1-201ENST00000560672 389 ntBASIC14.81□□□□□ -0.04
CPNE4Q96A23 QPRT-203ENST00000562473 579 ntTSL 3 BASIC14.81□□□□□ -0.04
CPNE4Q96A23 INO80E-210ENST00000567705 880 ntTSL 3 BASIC14.81□□□□□ -0.04
CPNE4Q96A23 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC14.81□□□□□ -0.04
CPNE4Q96A23 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC14.81□□□□□ -0.04
CPNE4Q96A23 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC14.81□□□□□ -0.04
CPNE4Q96A23 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC14.81□□□□□ -0.04
CPNE4Q96A23 AC008267.7-201ENST00000624570 1194 ntBASIC14.81□□□□□ -0.04
CPNE4Q96A23 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
CPNE4Q96A23 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC14.81□□□□□ -0.04
CPNE4Q96A23 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CPNE4Q96A23 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CPNE4Q96A23 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC14.81□□□□□ -0.04
CPNE4Q96A23 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC14.81□□□□□ -0.04
CPNE4Q96A23 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 RNF34-208ENST00000555076 593 ntTSL 3 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 C8orf49-201ENST00000525043 1968 ntBASIC14.8□□□□□ -0.04
CPNE4Q96A23 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
CPNE4Q96A23 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CPNE4Q96A23 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms