Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.02■□□□□ 0.32
COPAP53621 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.02■□□□□ 0.32
COPAP53621 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
COPAP53621 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
COPAP53621 SLC22A20-204ENST00000530038 1673 ntBASIC17.02■□□□□ 0.32
COPAP53621 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COPAP53621 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COPAP53621 AC005237.2-201ENST00000434368 219 ntBASIC17.02■□□□□ 0.32
COPAP53621 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
COPAP53621 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.02■□□□□ 0.32
COPAP53621 MIR3197-201ENST00000582241 73 ntBASIC17.02■□□□□ 0.32
COPAP53621 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17.02■□□□□ 0.32
COPAP53621 AL161645.1-201ENST00000622716 1255 ntBASIC17.02■□□□□ 0.32
COPAP53621 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COPAP53621 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
COPAP53621 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.02■□□□□ 0.31
COPAP53621 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COPAP53621 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
COPAP53621 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
COPAP53621 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
COPAP53621 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
COPAP53621 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COPAP53621 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COPAP53621 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
COPAP53621 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
COPAP53621 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COPAP53621 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.01■□□□□ 0.31
COPAP53621 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.01■□□□□ 0.31
COPAP53621 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.01■□□□□ 0.31
COPAP53621 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COPAP53621 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
COPAP53621 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
COPAP53621 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COPAP53621 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COPAP53621 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COPAP53621 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COPAP53621 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COPAP53621 FAM58DP-201ENST00000428076 619 ntBASIC17.01■□□□□ 0.31
COPAP53621 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.01■□□□□ 0.31
COPAP53621 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COPAP53621 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.01■□□□□ 0.31
COPAP53621 AC069335.1-201ENST00000489972 472 ntBASIC17.01■□□□□ 0.31
COPAP53621 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.01■□□□□ 0.31
COPAP53621 AC109635.5-201ENST00000533593 962 ntBASIC17.01■□□□□ 0.31
COPAP53621 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.01■□□□□ 0.31
COPAP53621 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC17.01■□□□□ 0.31
COPAP53621 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.01■□□□□ 0.31
COPAP53621 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.01■□□□□ 0.31
COPAP53621 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COPAP53621 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.01■□□□□ 0.31
COPAP53621 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
COPAP53621 AC006449.5-201ENST00000610658 2098 ntBASIC17.01■□□□□ 0.31
COPAP53621 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.01■□□□□ 0.31
COPAP53621 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.01■□□□□ 0.31
COPAP53621 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
COPAP53621 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
COPAP53621 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COPAP53621 TOP3BP1-201ENST00000420768 1380 ntBASIC17.01■□□□□ 0.31
COPAP53621 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
COPAP53621 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
COPAP53621 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.01■□□□□ 0.31
COPAP53621 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COPAP53621 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17■□□□□ 0.31
COPAP53621 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
COPAP53621 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COPAP53621 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COPAP53621 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17■□□□□ 0.31
COPAP53621 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17■□□□□ 0.31
COPAP53621 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17■□□□□ 0.31
COPAP53621 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
COPAP53621 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COPAP53621 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COPAP53621 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COPAP53621 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17■□□□□ 0.31
COPAP53621 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17■□□□□ 0.31
COPAP53621 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17■□□□□ 0.31
COPAP53621 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COPAP53621 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17■□□□□ 0.31
COPAP53621 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
COPAP53621 HCG4-201ENST00000418983 998 ntBASIC17■□□□□ 0.31
COPAP53621 AC092474.2-201ENST00000424288 719 ntBASIC17■□□□□ 0.31
COPAP53621 SPCS2P4-201ENST00000436160 681 ntBASIC17■□□□□ 0.31
COPAP53621 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17■□□□□ 0.31
COPAP53621 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17■□□□□ 0.31
COPAP53621 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
COPAP53621 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17■□□□□ 0.31
COPAP53621 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17■□□□□ 0.31
COPAP53621 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17■□□□□ 0.31
COPAP53621 SPCS2P1-201ENST00000561636 679 ntBASIC17■□□□□ 0.31
COPAP53621 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17■□□□□ 0.31
COPAP53621 AC015911.4-201ENST00000588022 1070 ntBASIC17■□□□□ 0.31
COPAP53621 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17■□□□□ 0.31
COPAP53621 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
COPAP53621 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17■□□□□ 0.31
COPAP53621 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17■□□□□ 0.31
COPAP53621 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
COPAP53621 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
COPAP53621 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
COPAP53621 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
COPAP53621 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms