Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIG3P49916 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIG3P49916 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.42■□□□□ 0.38
LIG3P49916 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIG3P49916 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIG3P49916 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
LIG3P49916 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
LIG3P49916 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
LIG3P49916 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.41■□□□□ 0.38
LIG3P49916 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.41■□□□□ 0.38
LIG3P49916 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
LIG3P49916 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.41■□□□□ 0.38
LIG3P49916 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 TNRC18P2-201ENST00000417666 2714 ntBASIC17.41■□□□□ 0.38
LIG3P49916 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.41■□□□□ 0.38
LIG3P49916 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.41■□□□□ 0.38
LIG3P49916 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.41■□□□□ 0.38
LIG3P49916 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.41■□□□□ 0.38
LIG3P49916 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.41■□□□□ 0.38
LIG3P49916 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.41■□□□□ 0.38
LIG3P49916 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.41■□□□□ 0.38
LIG3P49916 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 AP002414.3-201ENST00000589352 1468 ntBASIC17.41■□□□□ 0.38
LIG3P49916 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
LIG3P49916 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
LIG3P49916 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC17.41■□□□□ 0.38
LIG3P49916 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
LIG3P49916 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIG3P49916 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.41■□□□□ 0.38
LIG3P49916 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC17.41■□□□□ 0.38
LIG3P49916 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.41■□□□□ 0.38
LIG3P49916 AL009178.2-201ENST00000597278 2719 ntBASIC17.41■□□□□ 0.38
LIG3P49916 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIG3P49916 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.4■□□□□ 0.38
LIG3P49916 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIG3P49916 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIG3P49916 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
LIG3P49916 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
LIG3P49916 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.4■□□□□ 0.38
LIG3P49916 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
LIG3P49916 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
LIG3P49916 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.4■□□□□ 0.38
LIG3P49916 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIG3P49916 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC17.4■□□□□ 0.38
LIG3P49916 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIG3P49916 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIG3P49916 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIG3P49916 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIG3P49916 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIG3P49916 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIG3P49916 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.4■□□□□ 0.38
LIG3P49916 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIG3P49916 SLC25A1P1-201ENST00000528351 927 ntBASIC17.4■□□□□ 0.38
LIG3P49916 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
LIG3P49916 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.4■□□□□ 0.38
LIG3P49916 AC006557.2-201ENST00000592985 1240 ntBASIC17.4■□□□□ 0.38
LIG3P49916 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.4■□□□□ 0.38
LIG3P49916 AL139327.4-201ENST00000612362 153 ntBASIC17.4■□□□□ 0.38
LIG3P49916 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
LIG3P49916 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
LIG3P49916 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
LIG3P49916 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC17.4■□□□□ 0.38
LIG3P49916 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIG3P49916 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.4■□□□□ 0.38
LIG3P49916 AC097637.2-201ENST00000624096 1997 ntBASIC17.4■□□□□ 0.38
LIG3P49916 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
LIG3P49916 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIG3P49916 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIG3P49916 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC17.4■□□□□ 0.38
LIG3P49916 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIG3P49916 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIG3P49916 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC17.4■□□□□ 0.38
LIG3P49916 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIG3P49916 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
LIG3P49916 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.39■□□□□ 0.38
LIG3P49916 NCF1C-201ENST00000438382 1427 ntBASIC17.39■□□□□ 0.38
LIG3P49916 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
LIG3P49916 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC17.39■□□□□ 0.37
LIG3P49916 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIG3P49916 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC17.39■□□□□ 0.37
LIG3P49916 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIG3P49916 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LIG3P49916 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms