Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
COL8A1P27658 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL8A1P27658 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL8A1P27658 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL8A1P27658 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC14.34□□□□□ -0.11
COL8A1P27658 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL8A1P27658 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL8A1P27658 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL8A1P27658 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL8A1P27658 APOC3-202ENST00000375345 604 ntTSL 5 BASIC14.34□□□□□ -0.11
COL8A1P27658 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL8A1P27658 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL8A1P27658 CDK2AP2P3-201ENST00000422476 372 ntBASIC14.34□□□□□ -0.11
COL8A1P27658 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.34□□□□□ -0.11
COL8A1P27658 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.34□□□□□ -0.11
COL8A1P27658 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.34□□□□□ -0.11
COL8A1P27658 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
COL8A1P27658 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC14.34□□□□□ -0.11
COL8A1P27658 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC14.34□□□□□ -0.11
COL8A1P27658 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
COL8A1P27658 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.34□□□□□ -0.11
COL8A1P27658 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC14.34□□□□□ -0.11
COL8A1P27658 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL8A1P27658 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
COL8A1P27658 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL8A1P27658 CDC14C-201ENST00000428251 1719 ntBASIC14.34□□□□□ -0.11
COL8A1P27658 AC131009.4-201ENST00000624048 1740 ntBASIC14.34□□□□□ -0.11
COL8A1P27658 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL8A1P27658 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC14.34□□□□□ -0.11
COL8A1P27658 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC14.34□□□□□ -0.11
COL8A1P27658 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC14.34□□□□□ -0.11
COL8A1P27658 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL8A1P27658 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
COL8A1P27658 AC006538.1-201ENST00000567905 1585 ntBASIC14.34□□□□□ -0.11
COL8A1P27658 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL8A1P27658 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
COL8A1P27658 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL8A1P27658 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL8A1P27658 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC14.33□□□□□ -0.11
COL8A1P27658 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC14.33□□□□□ -0.11
COL8A1P27658 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
COL8A1P27658 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL8A1P27658 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL8A1P27658 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL8A1P27658 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL8A1P27658 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC14.33□□□□□ -0.12
COL8A1P27658 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC14.33□□□□□ -0.12
COL8A1P27658 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC14.33□□□□□ -0.12
COL8A1P27658 CD276-201ENST00000318424 2738 ntTSL 5 BASIC14.33□□□□□ -0.12
COL8A1P27658 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC14.33□□□□□ -0.12
COL8A1P27658 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC14.33□□□□□ -0.12
COL8A1P27658 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC14.33□□□□□ -0.12
COL8A1P27658 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL8A1P27658 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL8A1P27658 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.33□□□□□ -0.12
COL8A1P27658 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL8A1P27658 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.33□□□□□ -0.12
COL8A1P27658 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL8A1P27658 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC14.33□□□□□ -0.12
COL8A1P27658 FAM220BP-201ENST00000377689 816 ntBASIC14.33□□□□□ -0.12
COL8A1P27658 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC14.33□□□□□ -0.12
COL8A1P27658 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC14.33□□□□□ -0.12
COL8A1P27658 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.33□□□□□ -0.12
COL8A1P27658 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.33□□□□□ -0.12
COL8A1P27658 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC14.33□□□□□ -0.12
COL8A1P27658 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC14.33□□□□□ -0.12
COL8A1P27658 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC14.33□□□□□ -0.12
COL8A1P27658 AC015936.2-201ENST00000593177 259 ntBASIC14.33□□□□□ -0.12
COL8A1P27658 AC093726.1-201ENST00000608064 963 ntBASIC14.33□□□□□ -0.12
COL8A1P27658 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL8A1P27658 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC14.33□□□□□ -0.12
COL8A1P27658 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL8A1P27658 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL8A1P27658 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC14.33□□□□□ -0.12
COL8A1P27658 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
COL8A1P27658 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL8A1P27658 TUBB1P2-201ENST00000422712 1306 ntBASIC14.33□□□□□ -0.12
COL8A1P27658 TUBB1P1-201ENST00000503144 1300 ntBASIC14.33□□□□□ -0.12
COL8A1P27658 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL8A1P27658 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
COL8A1P27658 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
COL8A1P27658 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL8A1P27658 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC14.33□□□□□ -0.12
COL8A1P27658 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC14.33□□□□□ -0.12
COL8A1P27658 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL8A1P27658 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL8A1P27658 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL8A1P27658 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL8A1P27658 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC14.33□□□□□ -0.12
COL8A1P27658 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC14.33□□□□□ -0.12
COL8A1P27658 PKD1P5-201ENST00000532415 10291 ntBASIC14.33□□□□□ -0.12
COL8A1P27658 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.32□□□□□ -0.12
COL8A1P27658 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL8A1P27658 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC14.32□□□□□ -0.12
COL8A1P27658 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC14.32□□□□□ -0.12
COL8A1P27658 AC067852.2-201ENST00000590513 2313 ntBASIC14.32□□□□□ -0.12
COL8A1P27658 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms