Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.21■□□□□ 0.19
VPS4BO75351 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS4BO75351 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
VPS4BO75351 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VPS4BO75351 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.21■□□□□ 0.19
VPS4BO75351 AP002414.3-201ENST00000589352 1468 ntBASIC16.21■□□□□ 0.19
VPS4BO75351 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.21■□□□□ 0.19
VPS4BO75351 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
VPS4BO75351 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
VPS4BO75351 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
VPS4BO75351 AC008894.3-201ENST00000624324 3103 ntBASIC16.21■□□□□ 0.18
VPS4BO75351 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
VPS4BO75351 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.2■□□□□ 0.18
VPS4BO75351 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS4BO75351 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.2■□□□□ 0.18
VPS4BO75351 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS4BO75351 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS4BO75351 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
VPS4BO75351 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS4BO75351 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS4BO75351 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS4BO75351 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.2■□□□□ 0.18
VPS4BO75351 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS4BO75351 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VPS4BO75351 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS4BO75351 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS4BO75351 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS4BO75351 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.2■□□□□ 0.18
VPS4BO75351 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.2■□□□□ 0.18
VPS4BO75351 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
VPS4BO75351 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
VPS4BO75351 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS4BO75351 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
VPS4BO75351 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
VPS4BO75351 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.2■□□□□ 0.18
VPS4BO75351 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.2■□□□□ 0.18
VPS4BO75351 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.2■□□□□ 0.18
VPS4BO75351 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.2■□□□□ 0.18
VPS4BO75351 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.2■□□□□ 0.18
VPS4BO75351 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.2■□□□□ 0.18
VPS4BO75351 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.2■□□□□ 0.18
VPS4BO75351 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.2■□□□□ 0.18
VPS4BO75351 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.2■□□□□ 0.18
VPS4BO75351 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.2■□□□□ 0.18
VPS4BO75351 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
VPS4BO75351 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.2■□□□□ 0.18
VPS4BO75351 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS4BO75351 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
VPS4BO75351 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS4BO75351 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS4BO75351 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS4BO75351 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
VPS4BO75351 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.19■□□□□ 0.18
VPS4BO75351 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS4BO75351 KRT8P39-201ENST00000396270 1433 ntBASIC16.19■□□□□ 0.18
VPS4BO75351 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.19■□□□□ 0.18
VPS4BO75351 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS4BO75351 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
VPS4BO75351 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS4BO75351 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
VPS4BO75351 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS4BO75351 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS4BO75351 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
VPS4BO75351 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.19■□□□□ 0.18
VPS4BO75351 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
VPS4BO75351 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS4BO75351 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS4BO75351 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.19■□□□□ 0.18
VPS4BO75351 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
VPS4BO75351 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS4BO75351 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS4BO75351 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS4BO75351 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS4BO75351 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS4BO75351 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS4BO75351 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
VPS4BO75351 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
VPS4BO75351 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
VPS4BO75351 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.19■□□□□ 0.18
VPS4BO75351 LAGE3P1-201ENST00000425356 484 ntBASIC16.19■□□□□ 0.18
VPS4BO75351 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS4BO75351 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS4BO75351 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS4BO75351 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS4BO75351 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC16.19■□□□□ 0.18
VPS4BO75351 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
VPS4BO75351 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.19■□□□□ 0.18
VPS4BO75351 NKAPP1-205ENST00000585790 367 ntBASIC16.19■□□□□ 0.18
VPS4BO75351 AC005593.1-201ENST00000624894 515 ntBASIC16.19■□□□□ 0.18
VPS4BO75351 PGM5P2-202ENST00000637225 1043 ntBASIC16.19■□□□□ 0.18
VPS4BO75351 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS4BO75351 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS4BO75351 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS4BO75351 AC105917.1-201ENST00000506637 2539 ntBASIC16.19■□□□□ 0.18
VPS4BO75351 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS4BO75351 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.19■□□□□ 0.18
VPS4BO75351 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
VPS4BO75351 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
VPS4BO75351 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.19■□□□□ 0.18
VPS4BO75351 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms