Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HDAC3O15379 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
HDAC3O15379 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
HDAC3O15379 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HDAC3O15379 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HDAC3O15379 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HDAC3O15379 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HDAC3O15379 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.07■□□□□ 0.16
HDAC3O15379 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
HDAC3O15379 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
HDAC3O15379 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.07■□□□□ 0.16
HDAC3O15379 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.07■□□□□ 0.16
HDAC3O15379 AC087641.1-201ENST00000557561 1021 ntBASIC16.07■□□□□ 0.16
HDAC3O15379 AC139887.3-201ENST00000568585 713 ntBASIC16.07■□□□□ 0.16
HDAC3O15379 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.07■□□□□ 0.16
HDAC3O15379 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.07■□□□□ 0.16
HDAC3O15379 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.07■□□□□ 0.16
HDAC3O15379 PGM5P2-202ENST00000637225 1043 ntBASIC16.07■□□□□ 0.16
HDAC3O15379 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HDAC3O15379 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HDAC3O15379 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.07■□□□□ 0.16
HDAC3O15379 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
HDAC3O15379 IER3-202ENST00000376377 1350 ntBASIC16.07■□□□□ 0.16
HDAC3O15379 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HDAC3O15379 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HDAC3O15379 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
HDAC3O15379 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.07■□□□□ 0.16
HDAC3O15379 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HDAC3O15379 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HDAC3O15379 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.07■□□□□ 0.16
HDAC3O15379 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
HDAC3O15379 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
HDAC3O15379 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.07■□□□□ 0.16
HDAC3O15379 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HDAC3O15379 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
HDAC3O15379 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
HDAC3O15379 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC3O15379 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.06■□□□□ 0.16
HDAC3O15379 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.06■□□□□ 0.16
HDAC3O15379 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.06■□□□□ 0.16
HDAC3O15379 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC3O15379 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
HDAC3O15379 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.06■□□□□ 0.16
HDAC3O15379 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC3O15379 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
HDAC3O15379 AL592424.1-201ENST00000563624 1536 ntBASIC16.06■□□□□ 0.16
HDAC3O15379 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC3O15379 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
HDAC3O15379 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC3O15379 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC3O15379 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.06■□□□□ 0.16
HDAC3O15379 PTCHD3P3-201ENST00000403073 906 ntBASIC16.06■□□□□ 0.16
HDAC3O15379 RBM17P3-201ENST00000417687 1192 ntBASIC16.06■□□□□ 0.16
HDAC3O15379 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.06■□□□□ 0.16
HDAC3O15379 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC3O15379 SLC25A6P2-201ENST00000497974 877 ntBASIC16.06■□□□□ 0.16
HDAC3O15379 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC3O15379 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.06■□□□□ 0.16
HDAC3O15379 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
HDAC3O15379 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.06■□□□□ 0.16
HDAC3O15379 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
HDAC3O15379 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.06■□□□□ 0.16
HDAC3O15379 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.06■□□□□ 0.16
HDAC3O15379 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC3O15379 AC004706.3-202ENST00000621574 984 ntBASIC16.06■□□□□ 0.16
HDAC3O15379 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.06■□□□□ 0.16
HDAC3O15379 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HDAC3O15379 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
HDAC3O15379 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.05■□□□□ 0.16
HDAC3O15379 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.05■□□□□ 0.16
HDAC3O15379 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.05■□□□□ 0.16
HDAC3O15379 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC3O15379 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC3O15379 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC3O15379 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
HDAC3O15379 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.05■□□□□ 0.16
HDAC3O15379 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.05■□□□□ 0.16
HDAC3O15379 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
HDAC3O15379 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
HDAC3O15379 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.05■□□□□ 0.16
HDAC3O15379 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC3O15379 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC3O15379 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC3O15379 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC3O15379 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
HDAC3O15379 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.05■□□□□ 0.16
HDAC3O15379 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC3O15379 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.05■□□□□ 0.16
HDAC3O15379 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.05■□□□□ 0.16
HDAC3O15379 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.05■□□□□ 0.16
HDAC3O15379 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.05■□□□□ 0.16
HDAC3O15379 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.05■□□□□ 0.16
HDAC3O15379 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.05■□□□□ 0.16
HDAC3O15379 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.05■□□□□ 0.16
HDAC3O15379 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.05■□□□□ 0.16
HDAC3O15379 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.05■□□□□ 0.16
HDAC3O15379 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.05■□□□□ 0.16
HDAC3O15379 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.05■□□□□ 0.16
HDAC3O15379 NPAP1P7-201ENST00000613027 823 ntBASIC16.05■□□□□ 0.16
HDAC3O15379 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms