Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 PMS2P4-201ENST00000412466 1052 ntBASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 AL031284.1-201ENST00000419297 478 ntBASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 AC104692.2-201ENST00000603054 253 ntBASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 PRKN-208ENST00000610470 531 ntTSL 2 BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 PRKN-209ENST00000612485 225 ntTSL 5 BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 MIR7706-201ENST00000613747 67 ntBASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 ACE-204ENST00000428043 5120 ntTSL 2 BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC19.42■□□□□ 0.7
LIMCH1Q9UPQ0 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 AC004870.1-201ENST00000315132 882 ntBASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 VN2R19P-201ENST00000442399 1052 ntBASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 FAAHP1-202ENST00000446499 1238 ntBASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 AP002469.2-201ENST00000531724 424 ntBASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
LIMCH1Q9UPQ0 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 AC069224.1-201ENST00000566372 1715 ntBASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 MIR648-201ENST00000385046 94 ntBASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 IGLL3P-201ENST00000412472 434 ntBASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 VMO1-203ENST00000416307 712 ntTSL 2 BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 AC098831.1-202ENST00000438821 336 ntBASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 AC116407.3-201ENST00000623905 1129 ntBASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 HLA-DQB2-231ENST00000435145 2026 ntBASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms