Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 PPOX-219ENST00000544598 813 ntTSL 2 BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 LINC01023-201ENST00000606054 436 ntBASIC15.12■□□□□ 0.01
CLN6Q9NWW5 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 TP73-AS1-210ENST00000637775 1455 ntBASIC15.12■□□□□ 0.01
CLN6Q9NWW5 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 ACE-203ENST00000413513 2237 ntTSL 2 BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 AL512652.2-201ENST00000625156 1716 ntBASIC15.12■□□□□ 0.01
CLN6Q9NWW5 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CLN6Q9NWW5 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 AC243591.1-201ENST00000452967 1364 ntBASIC15.11■□□□□ 0.01
CLN6Q9NWW5 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 LINC02447-202ENST00000501888 2146 ntBASIC15.11■□□□□ 0.01
CLN6Q9NWW5 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 AC148477.5-201ENST00000625164 1645 ntBASIC15.11■□□□□ 0.01
CLN6Q9NWW5 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 CHCHD2P8-201ENST00000429873 447 ntBASIC15.11■□□□□ 0.01
CLN6Q9NWW5 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 TERC-201ENST00000602385 541 ntBASIC15.11■□□□□ 0.01
CLN6Q9NWW5 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 AL031731.1-201ENST00000642131 2094 ntBASIC15.11■□□□□ 0.01
CLN6Q9NWW5 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 CDC14C-201ENST00000428251 1719 ntBASIC15.11■□□□□ 0.01
CLN6Q9NWW5 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 PMPCAP1-201ENST00000508114 1576 ntBASIC15.11■□□□□ 0.01
CLN6Q9NWW5 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.11■□□□□ 0.01
CLN6Q9NWW5 PCDHA3-202ENST00000532566 4594 ntBASIC15.1■□□□□ 0.01
CLN6Q9NWW5 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.1■□□□□ 0.01
CLN6Q9NWW5 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC15.1■□□□□ 0.01
CLN6Q9NWW5 AC112504.1-201ENST00000623415 1841 ntBASIC15.1■□□□□ 0.01
CLN6Q9NWW5 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
CLN6Q9NWW5 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLN6Q9NWW5 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLN6Q9NWW5 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CLN6Q9NWW5 PRAL-201ENST00000624952 3286 ntBASIC15.1■□□□□ 0.01
CLN6Q9NWW5 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CLN6Q9NWW5 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CLN6Q9NWW5 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms