Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC19.4■□□□□ 0.7
RNF41Q9H4P4 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF41Q9H4P4 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
RNF41Q9H4P4 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RNF41Q9H4P4 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RNF41Q9H4P4 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
RNF41Q9H4P4 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.7
RNF41Q9H4P4 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
RNF41Q9H4P4 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
RNF41Q9H4P4 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC19.39■□□□□ 0.7
RNF41Q9H4P4 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 AC005052.1-201ENST00000625181 2492 ntBASIC19.39■□□□□ 0.69
RNF41Q9H4P4 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
RNF41Q9H4P4 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 FAM220BP-201ENST00000377689 816 ntBASIC19.38■□□□□ 0.69
RNF41Q9H4P4 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 HLA-H-201ENST00000383620 1096 ntBASIC19.38■□□□□ 0.69
RNF41Q9H4P4 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 TSEN15P1-201ENST00000423257 515 ntBASIC19.38■□□□□ 0.69
RNF41Q9H4P4 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 HLA-J-203ENST00000494367 1087 ntBASIC19.38■□□□□ 0.69
RNF41Q9H4P4 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 DAD1-205ENST00000543337 501 ntTSL 3 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 GOLGA2P9-201ENST00000596977 1937 ntBASIC19.38■□□□□ 0.69
RNF41Q9H4P4 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 RELA-227ENST00000615805 2236 ntTSL 5 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 CROCCP1-201ENST00000426910 5675 ntBASIC19.38■□□□□ 0.69
RNF41Q9H4P4 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
RNF41Q9H4P4 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC19.37■□□□□ 0.69
RNF41Q9H4P4 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
RNF41Q9H4P4 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
RNF41Q9H4P4 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNF41Q9H4P4 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNF41Q9H4P4 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNF41Q9H4P4 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNF41Q9H4P4 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNF41Q9H4P4 RPL30-202ENST00000396070 440 ntTSL 2 BASIC19.37■□□□□ 0.69
RNF41Q9H4P4 GPS2P2-201ENST00000430745 888 ntBASIC19.37■□□□□ 0.69
RNF41Q9H4P4 RBPMS2P1-201ENST00000437762 623 ntBASIC19.37■□□□□ 0.69
RNF41Q9H4P4 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC19.37■□□□□ 0.69
RNF41Q9H4P4 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC19.37■□□□□ 0.69
RNF41Q9H4P4 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNF41Q9H4P4 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNF41Q9H4P4 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RNF41Q9H4P4 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RNF41Q9H4P4 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNF41Q9H4P4 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC19.37■□□□□ 0.69
RNF41Q9H4P4 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
RNF41Q9H4P4 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC19.37■□□□□ 0.69
RNF41Q9H4P4 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms