Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.51■□□□□ 0.23
CPNE1Q99829 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.51■□□□□ 0.23
CPNE1Q99829 AC105339.3-201ENST00000560043 636 ntBASIC16.51■□□□□ 0.23
CPNE1Q99829 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.51■□□□□ 0.23
CPNE1Q99829 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.51■□□□□ 0.23
CPNE1Q99829 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.51■□□□□ 0.23
CPNE1Q99829 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
CPNE1Q99829 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.51■□□□□ 0.23
CPNE1Q99829 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 LINC02447-202ENST00000501888 2146 ntBASIC16.51■□□□□ 0.23
CPNE1Q99829 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CPNE1Q99829 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.5■□□□□ 0.23
CPNE1Q99829 AL592424.1-201ENST00000563624 1536 ntBASIC16.5■□□□□ 0.23
CPNE1Q99829 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CPNE1Q99829 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CPNE1Q99829 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.5■□□□□ 0.23
CPNE1Q99829 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CPNE1Q99829 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CPNE1Q99829 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CPNE1Q99829 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.5■□□□□ 0.23
CPNE1Q99829 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CPNE1Q99829 AC112504.1-201ENST00000623415 1841 ntBASIC16.5■□□□□ 0.23
CPNE1Q99829 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.5■□□□□ 0.23
CPNE1Q99829 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CPNE1Q99829 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CPNE1Q99829 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CPNE1Q99829 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CPNE1Q99829 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CPNE1Q99829 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CPNE1Q99829 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.5■□□□□ 0.23
CPNE1Q99829 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.5■□□□□ 0.23
CPNE1Q99829 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.5■□□□□ 0.23
CPNE1Q99829 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.5■□□□□ 0.23
CPNE1Q99829 CLEC4GP1-201ENST00000596555 870 ntBASIC16.5■□□□□ 0.23
CPNE1Q99829 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CPNE1Q99829 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.5■□□□□ 0.23
CPNE1Q99829 AC005593.1-201ENST00000624894 515 ntBASIC16.5■□□□□ 0.23
CPNE1Q99829 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.5■□□□□ 0.23
CPNE1Q99829 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.5■□□□□ 0.23
CPNE1Q99829 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CPNE1Q99829 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CPNE1Q99829 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CPNE1Q99829 AC005622.1-201ENST00000636801 1703 ntBASIC16.5■□□□□ 0.23
CPNE1Q99829 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CPNE1Q99829 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.5■□□□□ 0.23
CPNE1Q99829 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CPNE1Q99829 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.5■□□□□ 0.23
CPNE1Q99829 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CPNE1Q99829 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CPNE1Q99829 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CPNE1Q99829 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CPNE1Q99829 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CPNE1Q99829 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CPNE1Q99829 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CPNE1Q99829 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.49■□□□□ 0.23
CPNE1Q99829 AP005117.1-202ENST00000581724 1908 ntBASIC16.49■□□□□ 0.23
CPNE1Q99829 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CPNE1Q99829 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CPNE1Q99829 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CPNE1Q99829 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CPNE1Q99829 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
CPNE1Q99829 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.49■□□□□ 0.23
CPNE1Q99829 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.49■□□□□ 0.23
CPNE1Q99829 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CPNE1Q99829 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CPNE1Q99829 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.49■□□□□ 0.23
CPNE1Q99829 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CPNE1Q99829 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.49■□□□□ 0.23
CPNE1Q99829 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.49■□□□□ 0.23
CPNE1Q99829 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.49■□□□□ 0.23
CPNE1Q99829 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CPNE1Q99829 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CPNE1Q99829 OR7E47P-204ENST00000575924 449 ntBASIC16.49■□□□□ 0.23
CPNE1Q99829 MIR4515-201ENST00000584082 81 ntBASIC16.49■□□□□ 0.23
CPNE1Q99829 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.49■□□□□ 0.23
CPNE1Q99829 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.49■□□□□ 0.23
CPNE1Q99829 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
CPNE1Q99829 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CPNE1Q99829 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.49■□□□□ 0.23
CPNE1Q99829 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CPNE1Q99829 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CPNE1Q99829 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.49■□□□□ 0.23
CPNE1Q99829 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CPNE1Q99829 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CPNE1Q99829 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.49■□□□□ 0.23
CPNE1Q99829 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms