Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
RFX4Q33E94 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFX4Q33E94 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
RFX4Q33E94 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
RFX4Q33E94 LINC02447-202ENST00000501888 2146 ntBASIC15.41■□□□□ 0.06
RFX4Q33E94 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RFX4Q33E94 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC15.41■□□□□ 0.06
RFX4Q33E94 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.41■□□□□ 0.06
RFX4Q33E94 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFX4Q33E94 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RFX4Q33E94 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
RFX4Q33E94 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFX4Q33E94 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFX4Q33E94 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 AC112504.1-201ENST00000623415 1841 ntBASIC15.4■□□□□ 0.06
RFX4Q33E94 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.4■□□□□ 0.06
RFX4Q33E94 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.4■□□□□ 0.06
RFX4Q33E94 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.4■□□□□ 0.06
RFX4Q33E94 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 AC013268.4-201ENST00000637413 2228 ntBASIC15.4■□□□□ 0.06
RFX4Q33E94 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
RFX4Q33E94 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.4■□□□□ 0.06
RFX4Q33E94 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.4■□□□□ 0.06
RFX4Q33E94 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
RFX4Q33E94 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
RFX4Q33E94 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 SPDYE21P-201ENST00000413323 827 ntBASIC15.4■□□□□ 0.06
RFX4Q33E94 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
RFX4Q33E94 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC15.4■□□□□ 0.06
RFX4Q33E94 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 NME3-204ENST00000563498 920 ntTSL 2 BASIC15.4■□□□□ 0.06
RFX4Q33E94 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 ABBA01031661.1-201ENST00000634362 1253 ntBASIC15.4■□□□□ 0.06
RFX4Q33E94 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.4■□□□□ 0.06
RFX4Q33E94 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.4■□□□□ 0.06
RFX4Q33E94 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
RFX4Q33E94 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.4■□□□□ 0.06
RFX4Q33E94 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
RFX4Q33E94 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
RFX4Q33E94 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.4■□□□□ 0.06
RFX4Q33E94 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.4■□□□□ 0.06
RFX4Q33E94 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.4■□□□□ 0.06
RFX4Q33E94 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
RFX4Q33E94 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFX4Q33E94 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
RFX4Q33E94 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RFX4Q33E94 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.39■□□□□ 0.05
RFX4Q33E94 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.39■□□□□ 0.05
RFX4Q33E94 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.39■□□□□ 0.05
RFX4Q33E94 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFX4Q33E94 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RFX4Q33E94 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.39■□□□□ 0.05
RFX4Q33E94 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.39■□□□□ 0.05
RFX4Q33E94 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFX4Q33E94 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC15.39■□□□□ 0.05
RFX4Q33E94 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RFX4Q33E94 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RFX4Q33E94 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
RFX4Q33E94 SOD2-201ENST00000337404 991 ntTSL 2 BASIC15.39■□□□□ 0.05
RFX4Q33E94 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFX4Q33E94 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RFX4Q33E94 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
RFX4Q33E94 PCED1CP-201ENST00000419887 785 ntBASIC15.39■□□□□ 0.05
RFX4Q33E94 LINC00265-3P-201ENST00000447588 903 ntBASIC15.39■□□□□ 0.05
RFX4Q33E94 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFX4Q33E94 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
RFX4Q33E94 IL11-204ENST00000590625 1028 ntTSL 2 BASIC15.39■□□□□ 0.05
RFX4Q33E94 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC15.39■□□□□ 0.05
RFX4Q33E94 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC15.39■□□□□ 0.05
RFX4Q33E94 AC114341.1-201ENST00000618070 349 ntBASIC15.39■□□□□ 0.05
RFX4Q33E94 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RFX4Q33E94 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RFX4Q33E94 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
RFX4Q33E94 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFX4Q33E94 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFX4Q33E94 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.39■□□□□ 0.05
RFX4Q33E94 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
RFX4Q33E94 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.39■□□□□ 0.05
RFX4Q33E94 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms