Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 CXCL1P1-201ENST00000502804 216 ntBASIC13.35□□□□□ -0.27
CX3CL1P78423 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC13.35□□□□□ -0.27
CX3CL1P78423 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC13.35□□□□□ -0.27
CX3CL1P78423 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC13.35□□□□□ -0.27
CX3CL1P78423 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC13.35□□□□□ -0.27
CX3CL1P78423 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
CX3CL1P78423 MIR4492-201ENST00000581627 80 ntBASIC13.35□□□□□ -0.27
CX3CL1P78423 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
CX3CL1P78423 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC13.35□□□□□ -0.27
CX3CL1P78423 BX640515.1-201ENST00000617215 977 ntBASIC13.35□□□□□ -0.27
CX3CL1P78423 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC13.35□□□□□ -0.27
CX3CL1P78423 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CX3CL1P78423 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CL1P78423 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
CX3CL1P78423 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
CX3CL1P78423 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CL1P78423 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC13.35□□□□□ -0.27
CX3CL1P78423 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CL1P78423 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CL1P78423 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CL1P78423 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CL1P78423 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CL1P78423 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
CX3CL1P78423 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CL1P78423 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CL1P78423 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CL1P78423 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC13.35□□□□□ -0.27
CX3CL1P78423 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC13.35□□□□□ -0.27
CX3CL1P78423 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC13.35□□□□□ -0.27
CX3CL1P78423 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CL1P78423 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CX3CL1P78423 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
CX3CL1P78423 TSPY26P-202ENST00000565928 3884 ntBASIC13.35□□□□□ -0.27
CX3CL1P78423 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
CX3CL1P78423 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CL1P78423 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CL1P78423 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CL1P78423 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CL1P78423 SLC22A20-204ENST00000530038 1673 ntBASIC13.34□□□□□ -0.27
CX3CL1P78423 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC13.34□□□□□ -0.27
CX3CL1P78423 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC13.34□□□□□ -0.27
CX3CL1P78423 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CL1P78423 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC13.34□□□□□ -0.27
CX3CL1P78423 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
CX3CL1P78423 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC13.34□□□□□ -0.27
CX3CL1P78423 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CL1P78423 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC13.34□□□□□ -0.27
CX3CL1P78423 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
CX3CL1P78423 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC13.34□□□□□ -0.27
CX3CL1P78423 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC13.34□□□□□ -0.27
CX3CL1P78423 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CL1P78423 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CL1P78423 PMS2P1-201ENST00000431037 1228 ntBASIC13.34□□□□□ -0.27
CX3CL1P78423 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CL1P78423 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC13.34□□□□□ -0.27
CX3CL1P78423 AC120114.3-201ENST00000611923 658 ntBASIC13.34□□□□□ -0.27
CX3CL1P78423 AP001350.2-201ENST00000625104 1094 ntBASIC13.34□□□□□ -0.27
CX3CL1P78423 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
CX3CL1P78423 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC13.34□□□□□ -0.27
CX3CL1P78423 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CL1P78423 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CL1P78423 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
CX3CL1P78423 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CL1P78423 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CL1P78423 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC13.34□□□□□ -0.27
CX3CL1P78423 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CL1P78423 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CL1P78423 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CL1P78423 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC13.34□□□□□ -0.27
CX3CL1P78423 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC13.34□□□□□ -0.27
CX3CL1P78423 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CL1P78423 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC13.34□□□□□ -0.27
CX3CL1P78423 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CL1P78423 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
CX3CL1P78423 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CX3CL1P78423 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
CX3CL1P78423 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
CX3CL1P78423 ZNF259P1-201ENST00000407656 1365 ntBASIC13.33□□□□□ -0.27
CX3CL1P78423 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC13.33□□□□□ -0.27
CX3CL1P78423 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
CX3CL1P78423 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
CX3CL1P78423 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CL1P78423 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CL1P78423 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC13.33□□□□□ -0.28
CX3CL1P78423 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CL1P78423 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CL1P78423 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CL1P78423 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CL1P78423 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC13.33□□□□□ -0.28
CX3CL1P78423 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
CX3CL1P78423 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CL1P78423 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CL1P78423 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
CX3CL1P78423 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC13.33□□□□□ -0.28
CX3CL1P78423 HCG4-201ENST00000418983 998 ntBASIC13.33□□□□□ -0.28
CX3CL1P78423 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC13.33□□□□□ -0.28
CX3CL1P78423 HCG4B-203ENST00000450128 991 ntBASIC13.33□□□□□ -0.28
CX3CL1P78423 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CX3CL1P78423 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC13.33□□□□□ -0.28
CX3CL1P78423 POLD4-207ENST00000531239 584 ntTSL 2 BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms