Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC13.77□□□□□ -0.21
HOXA1P49639 KLF4P1-201ENST00000412782 1185 ntBASIC13.77□□□□□ -0.21
HOXA1P49639 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC13.77□□□□□ -0.21
HOXA1P49639 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC13.77□□□□□ -0.21
HOXA1P49639 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC13.77□□□□□ -0.21
HOXA1P49639 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC13.77□□□□□ -0.21
HOXA1P49639 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 VENTXP7-201ENST00000475503 772 ntBASIC13.77□□□□□ -0.21
HOXA1P49639 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC13.77□□□□□ -0.21
HOXA1P49639 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
HOXA1P49639 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 AP002490.2-201ENST00000524791 560 ntBASIC13.77□□□□□ -0.21
HOXA1P49639 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
HOXA1P49639 IGHV3-41-201ENST00000613121 348 ntBASIC13.77□□□□□ -0.21
HOXA1P49639 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
HOXA1P49639 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
HOXA1P49639 AL135999.2-201ENST00000622438 1686 ntBASIC13.77□□□□□ -0.21
HOXA1P49639 AC073912.3-201ENST00000624414 853 ntBASIC13.77□□□□□ -0.21
HOXA1P49639 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
HOXA1P49639 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC13.77□□□□□ -0.21
HOXA1P49639 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC13.77□□□□□ -0.21
HOXA1P49639 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC13.77□□□□□ -0.21
HOXA1P49639 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC13.77□□□□□ -0.21
HOXA1P49639 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC13.77□□□□□ -0.21
HOXA1P49639 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC13.77□□□□□ -0.21
HOXA1P49639 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
HOXA1P49639 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
HOXA1P49639 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HOXA1P49639 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
HOXA1P49639 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC13.76□□□□□ -0.21
HOXA1P49639 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
HOXA1P49639 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
HOXA1P49639 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
HOXA1P49639 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 AC009336.1-201ENST00000608941 1553 ntBASIC13.76□□□□□ -0.21
HOXA1P49639 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 AC073508.3-201ENST00000619697 1419 ntBASIC13.76□□□□□ -0.21
HOXA1P49639 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC13.76□□□□□ -0.21
HOXA1P49639 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
HOXA1P49639 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC13.76□□□□□ -0.21
HOXA1P49639 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC13.76□□□□□ -0.21
HOXA1P49639 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
HOXA1P49639 AC003669.1-201ENST00000334569 611 ntBASIC13.76□□□□□ -0.21
HOXA1P49639 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
HOXA1P49639 NKTR-203ENST00000442970 646 ntTSL 2 BASIC13.76□□□□□ -0.21
HOXA1P49639 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC13.76□□□□□ -0.21
HOXA1P49639 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
HOXA1P49639 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 LY6E-213ENST00000522528 606 ntTSL 3 BASIC13.76□□□□□ -0.21
HOXA1P49639 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC13.76□□□□□ -0.21
HOXA1P49639 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC13.76□□□□□ -0.21
HOXA1P49639 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
HOXA1P49639 AL138831.2-201ENST00000606564 490 ntBASIC13.76□□□□□ -0.21
HOXA1P49639 AC083849.1-201ENST00000615227 514 ntBASIC13.76□□□□□ -0.21
HOXA1P49639 AC006011.2-201ENST00000621313 1158 ntBASIC13.76□□□□□ -0.21
HOXA1P49639 VPS72-207ENST00000640458 689 ntTSL 5 BASIC13.76□□□□□ -0.21
HOXA1P49639 AC097493.4-201ENST00000641197 219 ntBASIC13.76□□□□□ -0.21
HOXA1P49639 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 AL161772.1-201ENST00000610494 4412 ntBASIC13.76□□□□□ -0.21
HOXA1P49639 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
HOXA1P49639 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
HOXA1P49639 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
HOXA1P49639 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
HOXA1P49639 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HOXA1P49639 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC13.75□□□□□ -0.21
HOXA1P49639 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
HOXA1P49639 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms