Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 AC091167.2-201ENST00000579581 588 ntBASIC16.23■□□□□ 0.19
CDH3P22223 AL596442.2-201ENST00000610240 980 ntBASIC16.23■□□□□ 0.19
CDH3P22223 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.23■□□□□ 0.19
CDH3P22223 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.23■□□□□ 0.19
CDH3P22223 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH3P22223 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH3P22223 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH3P22223 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH3P22223 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH3P22223 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.23■□□□□ 0.19
CDH3P22223 NFIC-211ENST00000641145 8399 ntBASIC16.23■□□□□ 0.19
CDH3P22223 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH3P22223 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH3P22223 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.23■□□□□ 0.19
CDH3P22223 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC16.23■□□□□ 0.19
CDH3P22223 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH3P22223 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH3P22223 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
CDH3P22223 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
CDH3P22223 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH3P22223 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH3P22223 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH3P22223 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CDH3P22223 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH3P22223 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.23■□□□□ 0.19
CDH3P22223 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
CDH3P22223 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.22■□□□□ 0.19
CDH3P22223 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.22■□□□□ 0.19
CDH3P22223 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.22■□□□□ 0.19
CDH3P22223 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 AC092053.1-201ENST00000605787 1936 ntBASIC16.22■□□□□ 0.19
CDH3P22223 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 AC002056.1-201ENST00000395613 760 ntBASIC16.22■□□□□ 0.19
CDH3P22223 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.22■□□□□ 0.19
CDH3P22223 DNAJB3-202ENST00000449667 1266 ntBASIC16.22■□□□□ 0.19
CDH3P22223 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.22■□□□□ 0.19
CDH3P22223 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.22■□□□□ 0.19
CDH3P22223 SNHG9-202ENST00000564014 471 ntBASIC16.22■□□□□ 0.19
CDH3P22223 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.22■□□□□ 0.19
CDH3P22223 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CDH3P22223 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.22■□□□□ 0.19
CDH3P22223 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
CDH3P22223 AP001350.2-201ENST00000625104 1094 ntBASIC16.22■□□□□ 0.19
CDH3P22223 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.22■□□□□ 0.19
CDH3P22223 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CDH3P22223 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.22■□□□□ 0.19
CDH3P22223 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CDH3P22223 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
CDH3P22223 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.22■□□□□ 0.19
CDH3P22223 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDH3P22223 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.22■□□□□ 0.19
CDH3P22223 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.21■□□□□ 0.19
CDH3P22223 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
CDH3P22223 AC106886.4-201ENST00000623557 2502 ntBASIC16.21■□□□□ 0.19
CDH3P22223 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDH3P22223 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
CDH3P22223 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
CDH3P22223 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDH3P22223 AGGF1P2-201ENST00000426656 2106 ntBASIC16.21■□□□□ 0.19
CDH3P22223 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
CDH3P22223 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDH3P22223 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.21■□□□□ 0.19
CDH3P22223 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDH3P22223 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.21■□□□□ 0.19
CDH3P22223 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.21■□□□□ 0.19
CDH3P22223 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDH3P22223 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDH3P22223 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDH3P22223 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDH3P22223 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDH3P22223 HMGA1P7-201ENST00000406908 502 ntBASIC16.21■□□□□ 0.19
CDH3P22223 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.21■□□□□ 0.19
CDH3P22223 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC16.21■□□□□ 0.19
CDH3P22223 AC140658.5-201ENST00000438532 169 ntBASIC16.21■□□□□ 0.19
CDH3P22223 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.21■□□□□ 0.19
CDH3P22223 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.21■□□□□ 0.19
CDH3P22223 AP001160.2-201ENST00000596071 487 ntBASIC16.21■□□□□ 0.19
CDH3P22223 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDH3P22223 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDH3P22223 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDH3P22223 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDH3P22223 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms