Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
XRCC1P18887 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.49■□□□□ 0.23
XRCC1P18887 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
XRCC1P18887 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
XRCC1P18887 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
XRCC1P18887 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
XRCC1P18887 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
XRCC1P18887 TOP3BP1-201ENST00000420768 1380 ntBASIC16.49■□□□□ 0.23
XRCC1P18887 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
XRCC1P18887 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
XRCC1P18887 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
XRCC1P18887 AC068418.2-201ENST00000577309 3703 ntBASIC16.48■□□□□ 0.23
XRCC1P18887 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
XRCC1P18887 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
XRCC1P18887 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.48■□□□□ 0.23
XRCC1P18887 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
XRCC1P18887 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
XRCC1P18887 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
XRCC1P18887 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
XRCC1P18887 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
XRCC1P18887 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
XRCC1P18887 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
XRCC1P18887 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
XRCC1P18887 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
XRCC1P18887 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
XRCC1P18887 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.48■□□□□ 0.23
XRCC1P18887 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.48■□□□□ 0.23
XRCC1P18887 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.48■□□□□ 0.23
XRCC1P18887 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
XRCC1P18887 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.48■□□□□ 0.23
XRCC1P18887 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
XRCC1P18887 MIR4469-201ENST00000583919 79 ntBASIC16.48■□□□□ 0.23
XRCC1P18887 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.48■□□□□ 0.23
XRCC1P18887 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
XRCC1P18887 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
XRCC1P18887 ELL2P1-201ENST00000413990 1906 ntBASIC16.48■□□□□ 0.23
XRCC1P18887 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
XRCC1P18887 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
XRCC1P18887 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
XRCC1P18887 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
XRCC1P18887 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
XRCC1P18887 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.48■□□□□ 0.23
XRCC1P18887 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
XRCC1P18887 AL353732.1-201ENST00000569618 1459 ntBASIC16.48■□□□□ 0.23
XRCC1P18887 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.48■□□□□ 0.23
XRCC1P18887 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
XRCC1P18887 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
XRCC1P18887 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
XRCC1P18887 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
XRCC1P18887 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
XRCC1P18887 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
XRCC1P18887 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.47■□□□□ 0.23
XRCC1P18887 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
XRCC1P18887 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
XRCC1P18887 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.47■□□□□ 0.23
XRCC1P18887 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.47■□□□□ 0.23
XRCC1P18887 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.47■□□□□ 0.23
XRCC1P18887 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.47■□□□□ 0.23
XRCC1P18887 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.47■□□□□ 0.23
XRCC1P18887 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
XRCC1P18887 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
XRCC1P18887 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.47■□□□□ 0.23
XRCC1P18887 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.47■□□□□ 0.23
XRCC1P18887 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.47■□□□□ 0.23
XRCC1P18887 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC16.47■□□□□ 0.23
XRCC1P18887 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.47■□□□□ 0.23
XRCC1P18887 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
XRCC1P18887 AP006288.1-201ENST00000446065 395 ntBASIC16.47■□□□□ 0.23
XRCC1P18887 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.47■□□□□ 0.23
XRCC1P18887 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.47■□□□□ 0.23
XRCC1P18887 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.47■□□□□ 0.23
XRCC1P18887 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.47■□□□□ 0.23
XRCC1P18887 DUX4L17-201ENST00000557360 1267 ntBASIC16.47■□□□□ 0.23
XRCC1P18887 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.47■□□□□ 0.23
XRCC1P18887 AP002472.1-201ENST00000577490 586 ntBASIC16.47■□□□□ 0.23
XRCC1P18887 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.47■□□□□ 0.23
XRCC1P18887 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
XRCC1P18887 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.47■□□□□ 0.23
XRCC1P18887 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.47■□□□□ 0.23
XRCC1P18887 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.47■□□□□ 0.23
XRCC1P18887 AL078644.1-201ENST00000609881 752 ntBASIC16.47■□□□□ 0.23
XRCC1P18887 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.47■□□□□ 0.23
XRCC1P18887 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
XRCC1P18887 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
XRCC1P18887 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.47■□□□□ 0.23
XRCC1P18887 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.47■□□□□ 0.23
XRCC1P18887 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
XRCC1P18887 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
XRCC1P18887 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
XRCC1P18887 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
XRCC1P18887 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
XRCC1P18887 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
XRCC1P18887 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.47■□□□□ 0.23
XRCC1P18887 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
XRCC1P18887 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
XRCC1P18887 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.47■□□□□ 0.23
XRCC1P18887 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
XRCC1P18887 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.47■□□□□ 0.23
XRCC1P18887 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
XRCC1P18887 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms