Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.14■□□□□ 0.17
PCNAP12004 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.14■□□□□ 0.17
PCNAP12004 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
PCNAP12004 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCNAP12004 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PCNAP12004 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCNAP12004 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCNAP12004 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PCNAP12004 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.14■□□□□ 0.17
PCNAP12004 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.14■□□□□ 0.17
PCNAP12004 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.14■□□□□ 0.17
PCNAP12004 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.14■□□□□ 0.17
PCNAP12004 AC009078.2-202ENST00000463353 338 ntBASIC16.14■□□□□ 0.17
PCNAP12004 AC108751.1-201ENST00000490852 363 ntBASIC16.14■□□□□ 0.17
PCNAP12004 AL662844.1-201ENST00000546340 181 ntBASIC16.14■□□□□ 0.17
PCNAP12004 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
PCNAP12004 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC16.14■□□□□ 0.17
PCNAP12004 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.14■□□□□ 0.17
PCNAP12004 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.14■□□□□ 0.17
PCNAP12004 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.14■□□□□ 0.17
PCNAP12004 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.14■□□□□ 0.17
PCNAP12004 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCNAP12004 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCNAP12004 SLC22A20-204ENST00000530038 1673 ntBASIC16.14■□□□□ 0.17
PCNAP12004 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
PCNAP12004 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCNAP12004 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PCNAP12004 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCNAP12004 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PCNAP12004 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
PCNAP12004 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.13■□□□□ 0.17
PCNAP12004 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.13■□□□□ 0.17
PCNAP12004 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
PCNAP12004 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
PCNAP12004 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.13■□□□□ 0.17
PCNAP12004 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.13■□□□□ 0.17
PCNAP12004 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 AL513523.2-202ENST00000427283 2040 ntBASIC16.13■□□□□ 0.17
PCNAP12004 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.13■□□□□ 0.17
PCNAP12004 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
PCNAP12004 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.13■□□□□ 0.17
PCNAP12004 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
PCNAP12004 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.13■□□□□ 0.17
PCNAP12004 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.13■□□□□ 0.17
PCNAP12004 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.13■□□□□ 0.17
PCNAP12004 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.13■□□□□ 0.17
PCNAP12004 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.13■□□□□ 0.17
PCNAP12004 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.13■□□□□ 0.17
PCNAP12004 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.13■□□□□ 0.17
PCNAP12004 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
PCNAP12004 AC005412.3-201ENST00000580309 715 ntBASIC16.13■□□□□ 0.17
PCNAP12004 MIR4492-201ENST00000581627 80 ntBASIC16.13■□□□□ 0.17
PCNAP12004 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
PCNAP12004 SLC25A6P4-201ENST00000586535 553 ntBASIC16.13■□□□□ 0.17
PCNAP12004 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.13■□□□□ 0.17
PCNAP12004 AP001350.2-201ENST00000625104 1094 ntBASIC16.13■□□□□ 0.17
PCNAP12004 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 CYP51A1P2-201ENST00000419457 1499 ntBASIC16.13■□□□□ 0.17
PCNAP12004 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.13■□□□□ 0.17
PCNAP12004 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.13■□□□□ 0.17
PCNAP12004 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 AL671710.1-201ENST00000610245 2349 ntBASIC16.13■□□□□ 0.17
PCNAP12004 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.13■□□□□ 0.17
PCNAP12004 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.13■□□□□ 0.17
PCNAP12004 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.13■□□□□ 0.17
PCNAP12004 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PCNAP12004 AC068418.2-201ENST00000577309 3703 ntBASIC16.12■□□□□ 0.17
PCNAP12004 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCNAP12004 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PCNAP12004 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCNAP12004 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
PCNAP12004 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.12■□□□□ 0.17
PCNAP12004 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCNAP12004 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCNAP12004 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCNAP12004 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCNAP12004 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PCNAP12004 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms