Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
PHGDHO43175 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.46■□□□□ 0.23
PHGDHO43175 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
PHGDHO43175 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PHGDHO43175 AC105917.1-201ENST00000506637 2539 ntBASIC16.46■□□□□ 0.23
PHGDHO43175 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
PHGDHO43175 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PHGDHO43175 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.46■□□□□ 0.23
PHGDHO43175 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PHGDHO43175 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PHGDHO43175 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PHGDHO43175 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.46■□□□□ 0.23
PHGDHO43175 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.46■□□□□ 0.23
PHGDHO43175 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
PHGDHO43175 FAM197Y8-203ENST00000450145 560 ntBASIC16.46■□□□□ 0.23
PHGDHO43175 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.46■□□□□ 0.23
PHGDHO43175 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.46■□□□□ 0.23
PHGDHO43175 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.46■□□□□ 0.23
PHGDHO43175 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.46■□□□□ 0.23
PHGDHO43175 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.46■□□□□ 0.23
PHGDHO43175 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PHGDHO43175 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PHGDHO43175 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PHGDHO43175 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PHGDHO43175 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.46■□□□□ 0.23
PHGDHO43175 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.46■□□□□ 0.23
PHGDHO43175 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.46■□□□□ 0.23
PHGDHO43175 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.46■□□□□ 0.23
PHGDHO43175 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.46■□□□□ 0.23
PHGDHO43175 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.46■□□□□ 0.22
PHGDHO43175 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
PHGDHO43175 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
PHGDHO43175 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.45■□□□□ 0.22
PHGDHO43175 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PHGDHO43175 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
PHGDHO43175 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PHGDHO43175 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PHGDHO43175 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PHGDHO43175 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PHGDHO43175 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.45■□□□□ 0.22
PHGDHO43175 LINC01144-201ENST00000626198 1710 ntBASIC16.45■□□□□ 0.22
PHGDHO43175 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PHGDHO43175 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PHGDHO43175 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.45■□□□□ 0.22
PHGDHO43175 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
PHGDHO43175 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PHGDHO43175 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.45■□□□□ 0.22
PHGDHO43175 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.45■□□□□ 0.22
PHGDHO43175 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PHGDHO43175 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
PHGDHO43175 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.45■□□□□ 0.22
PHGDHO43175 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PHGDHO43175 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.45■□□□□ 0.22
PHGDHO43175 HCG4-201ENST00000418983 998 ntBASIC16.45■□□□□ 0.22
PHGDHO43175 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PHGDHO43175 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.45■□□□□ 0.22
PHGDHO43175 AC018712.1-201ENST00000455767 687 ntBASIC16.45■□□□□ 0.22
PHGDHO43175 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.45■□□□□ 0.22
PHGDHO43175 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.45■□□□□ 0.22
PHGDHO43175 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.45■□□□□ 0.22
PHGDHO43175 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.45■□□□□ 0.22
PHGDHO43175 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.45■□□□□ 0.22
PHGDHO43175 AC105339.3-201ENST00000560043 636 ntBASIC16.45■□□□□ 0.22
PHGDHO43175 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PHGDHO43175 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PHGDHO43175 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.45■□□□□ 0.22
PHGDHO43175 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.45■□□□□ 0.22
PHGDHO43175 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PHGDHO43175 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.45■□□□□ 0.22
PHGDHO43175 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
PHGDHO43175 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.45■□□□□ 0.22
PHGDHO43175 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PHGDHO43175 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PHGDHO43175 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.45■□□□□ 0.22
PHGDHO43175 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.45■□□□□ 0.22
PHGDHO43175 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.45■□□□□ 0.22
PHGDHO43175 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PHGDHO43175 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PHGDHO43175 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PHGDHO43175 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PHGDHO43175 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PHGDHO43175 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PHGDHO43175 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PHGDHO43175 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PHGDHO43175 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.44■□□□□ 0.22
PHGDHO43175 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PHGDHO43175 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PHGDHO43175 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.44■□□□□ 0.22
PHGDHO43175 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PHGDHO43175 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PHGDHO43175 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.44■□□□□ 0.22
PHGDHO43175 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.44■□□□□ 0.22
PHGDHO43175 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.44■□□□□ 0.22
PHGDHO43175 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.44■□□□□ 0.22
PHGDHO43175 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
PHGDHO43175 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.44■□□□□ 0.22
PHGDHO43175 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.44■□□□□ 0.22
PHGDHO43175 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.44■□□□□ 0.22
PHGDHO43175 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.44■□□□□ 0.22
PHGDHO43175 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms