Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 AC026120.1-201ENST00000611536 926 ntBASIC16.64■□□□□ 0.25
TRIM38O00635 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM38O00635 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM38O00635 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.64■□□□□ 0.25
TRIM38O00635 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.64■□□□□ 0.25
TRIM38O00635 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM38O00635 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM38O00635 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.64■□□□□ 0.25
TRIM38O00635 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM38O00635 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM38O00635 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM38O00635 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM38O00635 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM38O00635 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.63■□□□□ 0.25
TRIM38O00635 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM38O00635 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.63■□□□□ 0.25
TRIM38O00635 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM38O00635 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM38O00635 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM38O00635 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.63■□□□□ 0.25
TRIM38O00635 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM38O00635 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.63■□□□□ 0.25
TRIM38O00635 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
TRIM38O00635 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.63■□□□□ 0.25
TRIM38O00635 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.63■□□□□ 0.25
TRIM38O00635 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM38O00635 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
TRIM38O00635 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM38O00635 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC16.63■□□□□ 0.25
TRIM38O00635 AL627223.1-201ENST00000416693 442 ntBASIC16.63■□□□□ 0.25
TRIM38O00635 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.63■□□□□ 0.25
TRIM38O00635 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.63■□□□□ 0.25
TRIM38O00635 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.63■□□□□ 0.25
TRIM38O00635 AC005498.2-205ENST00000593218 784 ntBASIC16.63■□□□□ 0.25
TRIM38O00635 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM38O00635 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.63■□□□□ 0.25
TRIM38O00635 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM38O00635 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.63■□□□□ 0.25
TRIM38O00635 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
TRIM38O00635 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
TRIM38O00635 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM38O00635 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.63■□□□□ 0.25
TRIM38O00635 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM38O00635 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.63■□□□□ 0.25
TRIM38O00635 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM38O00635 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM38O00635 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM38O00635 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.63■□□□□ 0.25
TRIM38O00635 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRIM38O00635 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
TRIM38O00635 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.63■□□□□ 0.25
TRIM38O00635 AL596257.1-201ENST00000641463 2694 ntBASIC16.63■□□□□ 0.25
TRIM38O00635 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.62■□□□□ 0.25
TRIM38O00635 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.62■□□□□ 0.25
TRIM38O00635 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.62■□□□□ 0.25
TRIM38O00635 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM38O00635 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM38O00635 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.62■□□□□ 0.25
TRIM38O00635 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM38O00635 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 AL035633.1-201ENST00000406139 838 ntBASIC16.62■□□□□ 0.25
TRIM38O00635 AC140658.5-201ENST00000438532 169 ntBASIC16.62■□□□□ 0.25
TRIM38O00635 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.62■□□□□ 0.25
TRIM38O00635 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM38O00635 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM38O00635 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
TRIM38O00635 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC16.62■□□□□ 0.25
TRIM38O00635 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.62■□□□□ 0.25
TRIM38O00635 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
TRIM38O00635 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.62■□□□□ 0.25
TRIM38O00635 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.62■□□□□ 0.25
TRIM38O00635 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
TRIM38O00635 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRIM38O00635 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM38O00635 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM38O00635 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM38O00635 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TRIM38O00635 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.61■□□□□ 0.25
TRIM38O00635 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.61■□□□□ 0.25
TRIM38O00635 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
TRIM38O00635 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms