Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 HLA-DRB6-201ENST00000411500 1235 ntBASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 AC125807.1-201ENST00000483097 614 ntBASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 AL158211.3-201ENST00000607385 239 ntBASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 RNF216P1-203ENST00000404404 2427 ntBASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 ACE-204ENST00000428043 5120 ntTSL 2 BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CHMP4AQ9BY43 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 RNA5SP421-201ENST00000516864 134 ntBASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 AC106028.4-201ENST00000614509 607 ntBASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CHMP4AQ9BY43 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
CHMP4AQ9BY43 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC20.95■□□□□ 0.95
CHMP4AQ9BY43 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 AC069120.2-201ENST00000524091 540 ntBASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 AC061975.2-201ENST00000581722 295 ntBASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 MIR4453-201ENST00000584019 89 ntBASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 AL355385.1-201ENST00000606123 409 ntBASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 AC003101.2-201ENST00000612557 442 ntBASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CHMP4AQ9BY43 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 AC008894.3-201ENST00000624324 3103 ntBASIC20.94■□□□□ 0.94
CHMP4AQ9BY43 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms