Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
PTCHD1Q96NR3 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC15.59■□□□□ 0.09
PTCHD1Q96NR3 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.59■□□□□ 0.09
PTCHD1Q96NR3 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTCHD1Q96NR3 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTCHD1Q96NR3 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.59■□□□□ 0.09
PTCHD1Q96NR3 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTCHD1Q96NR3 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PTCHD1Q96NR3 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTCHD1Q96NR3 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTCHD1Q96NR3 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTCHD1Q96NR3 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.58■□□□□ 0.09
PTCHD1Q96NR3 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
PTCHD1Q96NR3 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.09
PTCHD1Q96NR3 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.09
PTCHD1Q96NR3 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
PTCHD1Q96NR3 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
PTCHD1Q96NR3 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.58■□□□□ 0.09
PTCHD1Q96NR3 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
PTCHD1Q96NR3 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
PTCHD1Q96NR3 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 AP000344.2-201ENST00000512987 629 ntBASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.58■□□□□ 0.08
PTCHD1Q96NR3 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 AC004461.1-201ENST00000412461 403 ntBASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 AC079140.1-201ENST00000508039 487 ntBASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 AC243562.1-201ENST00000560672 389 ntBASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 AC022145.2-201ENST00000598203 171 ntBASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 AC004835.2-201ENST00000603762 682 ntBASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 AL513210.1-201ENST00000629608 234 ntBASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.57■□□□□ 0.08
PTCHD1Q96NR3 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms