Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS3Q969F9 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HPS3Q969F9 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS3Q969F9 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC18.29■□□□□ 0.52
HPS3Q969F9 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HPS3Q969F9 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.29■□□□□ 0.52
HPS3Q969F9 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC18.29■□□□□ 0.52
HPS3Q969F9 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.29■□□□□ 0.52
HPS3Q969F9 AC074386.1-202ENST00000463561 864 ntBASIC18.29■□□□□ 0.52
HPS3Q969F9 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HPS3Q969F9 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.29■□□□□ 0.52
HPS3Q969F9 SMN2-210ENST00000511812 867 ntTSL 2 BASIC18.29■□□□□ 0.52
HPS3Q969F9 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.29■□□□□ 0.52
HPS3Q969F9 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.29■□□□□ 0.52
HPS3Q969F9 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.29■□□□□ 0.52
HPS3Q969F9 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
HPS3Q969F9 AP002472.1-201ENST00000577490 586 ntBASIC18.29■□□□□ 0.52
HPS3Q969F9 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.29■□□□□ 0.52
HPS3Q969F9 AC021097.1-201ENST00000607902 574 ntBASIC18.29■□□□□ 0.52
HPS3Q969F9 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS3Q969F9 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS3Q969F9 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.29■□□□□ 0.52
HPS3Q969F9 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
HPS3Q969F9 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC18.29■□□□□ 0.52
HPS3Q969F9 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS3Q969F9 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS3Q969F9 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS3Q969F9 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS3Q969F9 AC005622.1-201ENST00000636801 1703 ntBASIC18.29■□□□□ 0.52
HPS3Q969F9 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
HPS3Q969F9 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HPS3Q969F9 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
HPS3Q969F9 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS3Q969F9 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS3Q969F9 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS3Q969F9 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC18.28■□□□□ 0.52
HPS3Q969F9 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS3Q969F9 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS3Q969F9 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
HPS3Q969F9 PAUPAR-201ENST00000630360 2965 ntBASIC18.28■□□□□ 0.52
HPS3Q969F9 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS3Q969F9 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
HPS3Q969F9 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HPS3Q969F9 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS3Q969F9 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HPS3Q969F9 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
HPS3Q969F9 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
HPS3Q969F9 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HPS3Q969F9 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.28■□□□□ 0.52
HPS3Q969F9 AL591424.1-201ENST00000442569 1213 ntBASIC18.28■□□□□ 0.52
HPS3Q969F9 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC18.28■□□□□ 0.52
HPS3Q969F9 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
HPS3Q969F9 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.28■□□□□ 0.52
HPS3Q969F9 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HPS3Q969F9 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS3Q969F9 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
HPS3Q969F9 MTHFR-217ENST00000641820 1569 ntBASIC18.28■□□□□ 0.52
HPS3Q969F9 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS3Q969F9 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC18.28■□□□□ 0.52
HPS3Q969F9 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.28■□□□□ 0.52
HPS3Q969F9 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS3Q969F9 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HPS3Q969F9 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.28■□□□□ 0.52
HPS3Q969F9 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
HPS3Q969F9 AC006449.6-201ENST00000612330 2296 ntBASIC18.28■□□□□ 0.52
HPS3Q969F9 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC18.27■□□□□ 0.52
HPS3Q969F9 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HPS3Q969F9 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.27■□□□□ 0.52
HPS3Q969F9 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HPS3Q969F9 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HPS3Q969F9 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC18.27■□□□□ 0.52
HPS3Q969F9 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HPS3Q969F9 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
HPS3Q969F9 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.27■□□□□ 0.52
HPS3Q969F9 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.27■□□□□ 0.52
HPS3Q969F9 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HPS3Q969F9 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HPS3Q969F9 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HPS3Q969F9 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
HPS3Q969F9 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC18.27■□□□□ 0.52
HPS3Q969F9 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.27■□□□□ 0.52
HPS3Q969F9 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC18.27■□□□□ 0.52
HPS3Q969F9 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HPS3Q969F9 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
HPS3Q969F9 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.27■□□□□ 0.52
HPS3Q969F9 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HPS3Q969F9 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.27■□□□□ 0.52
HPS3Q969F9 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HPS3Q969F9 PGAM5P1-201ENST00000518923 814 ntBASIC18.27■□□□□ 0.52
HPS3Q969F9 MIR3909-201ENST00000579518 119 ntBASIC18.27■□□□□ 0.52
HPS3Q969F9 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HPS3Q969F9 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HPS3Q969F9 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HPS3Q969F9 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.27■□□□□ 0.52
HPS3Q969F9 AC068137.2-201ENST00000605408 478 ntBASIC18.27■□□□□ 0.52
HPS3Q969F9 AC020765.3-201ENST00000613051 740 ntBASIC18.27■□□□□ 0.52
HPS3Q969F9 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.27■□□□□ 0.52
HPS3Q969F9 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.27■□□□□ 0.52
HPS3Q969F9 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
HPS3Q969F9 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms