Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
BRF1Q92994 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC19.44■□□□□ 0.7
BRF1Q92994 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC19.44■□□□□ 0.7
BRF1Q92994 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
BRF1Q92994 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
BRF1Q92994 AL596087.1-201ENST00000400979 1969 ntBASIC19.44■□□□□ 0.7
BRF1Q92994 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF1Q92994 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF1Q92994 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC19.44■□□□□ 0.7
BRF1Q92994 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF1Q92994 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF1Q92994 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF1Q92994 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF1Q92994 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF1Q92994 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC19.44■□□□□ 0.7
BRF1Q92994 AC006449.6-201ENST00000612330 2296 ntBASIC19.44■□□□□ 0.7
BRF1Q92994 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF1Q92994 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
BRF1Q92994 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.44■□□□□ 0.7
BRF1Q92994 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
BRF1Q92994 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BRF1Q92994 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
BRF1Q92994 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC19.43■□□□□ 0.7
BRF1Q92994 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BRF1Q92994 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BRF1Q92994 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.43■□□□□ 0.7
BRF1Q92994 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BRF1Q92994 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
BRF1Q92994 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
BRF1Q92994 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
BRF1Q92994 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC19.43■□□□□ 0.7
BRF1Q92994 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC19.43■□□□□ 0.7
BRF1Q92994 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BRF1Q92994 AC092474.2-201ENST00000424288 719 ntBASIC19.43■□□□□ 0.7
BRF1Q92994 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC19.43■□□□□ 0.7
BRF1Q92994 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.43■□□□□ 0.7
BRF1Q92994 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
BRF1Q92994 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
BRF1Q92994 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC19.43■□□□□ 0.7
BRF1Q92994 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.43■□□□□ 0.7
BRF1Q92994 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
BRF1Q92994 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
BRF1Q92994 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
BRF1Q92994 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
BRF1Q92994 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
BRF1Q92994 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC19.43■□□□□ 0.7
BRF1Q92994 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC19.43■□□□□ 0.7
BRF1Q92994 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
BRF1Q92994 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC19.42■□□□□ 0.7
BRF1Q92994 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
BRF1Q92994 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC19.42■□□□□ 0.7
BRF1Q92994 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
BRF1Q92994 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC19.42■□□□□ 0.7
BRF1Q92994 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
BRF1Q92994 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
BRF1Q92994 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC19.42■□□□□ 0.7
BRF1Q92994 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
BRF1Q92994 AC074386.1-202ENST00000463561 864 ntBASIC19.42■□□□□ 0.7
BRF1Q92994 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
BRF1Q92994 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC19.42■□□□□ 0.7
BRF1Q92994 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
BRF1Q92994 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC19.42■□□□□ 0.7
BRF1Q92994 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
BRF1Q92994 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC19.42■□□□□ 0.7
BRF1Q92994 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
BRF1Q92994 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
BRF1Q92994 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
BRF1Q92994 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
BRF1Q92994 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
BRF1Q92994 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC19.41■□□□□ 0.7
BRF1Q92994 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
BRF1Q92994 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
BRF1Q92994 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
BRF1Q92994 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRF1Q92994 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC19.41■□□□□ 0.7
BRF1Q92994 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRF1Q92994 BLK-205ENST00000529894 2017 ntTSL 5 BASIC19.41■□□□□ 0.7
BRF1Q92994 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
BRF1Q92994 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC19.41■□□□□ 0.7
BRF1Q92994 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRF1Q92994 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRF1Q92994 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
BRF1Q92994 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRF1Q92994 AL022342.1-201ENST00000400363 863 ntBASIC19.41■□□□□ 0.7
BRF1Q92994 MIR940-201ENST00000401276 94 ntBASIC19.41■□□□□ 0.7
BRF1Q92994 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.41■□□□□ 0.7
BRF1Q92994 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.41■□□□□ 0.7
BRF1Q92994 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC19.41■□□□□ 0.7
BRF1Q92994 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC19.41■□□□□ 0.7
BRF1Q92994 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
BRF1Q92994 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.41■□□□□ 0.7
BRF1Q92994 AC068137.2-201ENST00000605408 478 ntBASIC19.41■□□□□ 0.7
BRF1Q92994 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
BRF1Q92994 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC19.41■□□□□ 0.7
BRF1Q92994 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC19.41■□□□□ 0.7
BRF1Q92994 AC005622.1-201ENST00000636801 1703 ntBASIC19.41■□□□□ 0.7
BRF1Q92994 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
BRF1Q92994 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC19.41■□□□□ 0.7
BRF1Q92994 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC19.41■□□□□ 0.7
BRF1Q92994 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms