Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HDAC4P56524 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.27■□□□□ 0.35
HDAC4P56524 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
HDAC4P56524 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
HDAC4P56524 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.27■□□□□ 0.35
HDAC4P56524 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HDAC4P56524 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HDAC4P56524 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HDAC4P56524 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HDAC4P56524 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.27■□□□□ 0.35
HDAC4P56524 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
HDAC4P56524 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.26■□□□□ 0.35
HDAC4P56524 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.26■□□□□ 0.35
HDAC4P56524 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 AL162727.3-201ENST00000635661 2787 ntBASIC17.26■□□□□ 0.35
HDAC4P56524 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.26■□□□□ 0.35
HDAC4P56524 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.26■□□□□ 0.35
HDAC4P56524 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC17.26■□□□□ 0.35
HDAC4P56524 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.26■□□□□ 0.35
HDAC4P56524 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.26■□□□□ 0.35
HDAC4P56524 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.26■□□□□ 0.35
HDAC4P56524 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.26■□□□□ 0.35
HDAC4P56524 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.26■□□□□ 0.35
HDAC4P56524 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.26■□□□□ 0.35
HDAC4P56524 AC020765.3-201ENST00000613051 740 ntBASIC17.26■□□□□ 0.35
HDAC4P56524 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.26■□□□□ 0.35
HDAC4P56524 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.26■□□□□ 0.35
HDAC4P56524 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.26■□□□□ 0.35
HDAC4P56524 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.26■□□□□ 0.35
HDAC4P56524 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.26■□□□□ 0.35
HDAC4P56524 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HDAC4P56524 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC4P56524 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.25■□□□□ 0.35
HDAC4P56524 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
HDAC4P56524 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
HDAC4P56524 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.25■□□□□ 0.35
HDAC4P56524 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC4P56524 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC17.25■□□□□ 0.35
HDAC4P56524 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.25■□□□□ 0.35
HDAC4P56524 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC4P56524 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
HDAC4P56524 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC4P56524 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC4P56524 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.25■□□□□ 0.35
HDAC4P56524 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
HDAC4P56524 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC4P56524 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC4P56524 LINC01144-201ENST00000626198 1710 ntBASIC17.25■□□□□ 0.35
HDAC4P56524 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
HDAC4P56524 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC4P56524 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC4P56524 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC4P56524 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC4P56524 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC4P56524 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC4P56524 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC4P56524 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC4P56524 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.25■□□□□ 0.35
HDAC4P56524 AC040169.1-201ENST00000565382 521 ntBASIC17.25■□□□□ 0.35
HDAC4P56524 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.25■□□□□ 0.35
HDAC4P56524 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.25■□□□□ 0.35
HDAC4P56524 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.25■□□□□ 0.35
HDAC4P56524 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC4P56524 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC4P56524 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC4P56524 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.25■□□□□ 0.35
HDAC4P56524 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.25■□□□□ 0.35
HDAC4P56524 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
HDAC4P56524 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
HDAC4P56524 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.25■□□□□ 0.35
HDAC4P56524 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.24■□□□□ 0.35
HDAC4P56524 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC4P56524 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC4P56524 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.24■□□□□ 0.35
HDAC4P56524 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC4P56524 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
HDAC4P56524 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
HDAC4P56524 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
HDAC4P56524 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.24■□□□□ 0.35
HDAC4P56524 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms