Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC104640.1-201ENST00000562617 2109 ntBASIC16.26■□□□□ 0.19
PKNOX1P55347 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
PKNOX1P55347 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.26■□□□□ 0.19
PKNOX1P55347 AC006557.2-201ENST00000592985 1240 ntBASIC16.26■□□□□ 0.19
PKNOX1P55347 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.26■□□□□ 0.19
PKNOX1P55347 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.26■□□□□ 0.19
PKNOX1P55347 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.26■□□□□ 0.19
PKNOX1P55347 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.26■□□□□ 0.19
PKNOX1P55347 AL671710.1-201ENST00000610245 2349 ntBASIC16.26■□□□□ 0.19
PKNOX1P55347 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
PKNOX1P55347 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PKNOX1P55347 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.26■□□□□ 0.19
PKNOX1P55347 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.25■□□□□ 0.19
PKNOX1P55347 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
PKNOX1P55347 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
PKNOX1P55347 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PKNOX1P55347 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.25■□□□□ 0.19
PKNOX1P55347 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PKNOX1P55347 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PKNOX1P55347 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PKNOX1P55347 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
PKNOX1P55347 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
PKNOX1P55347 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PKNOX1P55347 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PKNOX1P55347 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PKNOX1P55347 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.25■□□□□ 0.19
PKNOX1P55347 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.25■□□□□ 0.19
PKNOX1P55347 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.25■□□□□ 0.19
PKNOX1P55347 LAGE3P1-201ENST00000425356 484 ntBASIC16.25■□□□□ 0.19
PKNOX1P55347 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.25■□□□□ 0.19
PKNOX1P55347 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PKNOX1P55347 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.25■□□□□ 0.19
PKNOX1P55347 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PKNOX1P55347 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.25■□□□□ 0.19
PKNOX1P55347 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PKNOX1P55347 LINC01711-201ENST00000598340 967 ntBASIC16.25■□□□□ 0.19
PKNOX1P55347 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.25■□□□□ 0.19
PKNOX1P55347 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PKNOX1P55347 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PKNOX1P55347 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
PKNOX1P55347 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PKNOX1P55347 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.25■□□□□ 0.19
PKNOX1P55347 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
PKNOX1P55347 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PKNOX1P55347 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PKNOX1P55347 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.25■□□□□ 0.19
PKNOX1P55347 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
PKNOX1P55347 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PKNOX1P55347 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
PKNOX1P55347 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PKNOX1P55347 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
PKNOX1P55347 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.25■□□□□ 0.19
PKNOX1P55347 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PKNOX1P55347 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
PKNOX1P55347 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PKNOX1P55347 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
PKNOX1P55347 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.25■□□□□ 0.19
PKNOX1P55347 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PKNOX1P55347 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.24■□□□□ 0.19
PKNOX1P55347 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.24■□□□□ 0.19
PKNOX1P55347 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PKNOX1P55347 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.24■□□□□ 0.19
PKNOX1P55347 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.24■□□□□ 0.19
PKNOX1P55347 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.24■□□□□ 0.19
PKNOX1P55347 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PKNOX1P55347 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
PKNOX1P55347 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
PKNOX1P55347 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
PKNOX1P55347 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
PKNOX1P55347 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PKNOX1P55347 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PKNOX1P55347 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PKNOX1P55347 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PKNOX1P55347 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.24■□□□□ 0.19
PKNOX1P55347 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PKNOX1P55347 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PKNOX1P55347 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PKNOX1P55347 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.24■□□□□ 0.19
PKNOX1P55347 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.24■□□□□ 0.19
PKNOX1P55347 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PKNOX1P55347 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PKNOX1P55347 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PKNOX1P55347 AL031731.1-201ENST00000642131 2094 ntBASIC16.24■□□□□ 0.19
PKNOX1P55347 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
PKNOX1P55347 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PKNOX1P55347 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PKNOX1P55347 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PKNOX1P55347 ELK2BP-201ENST00000415014 1224 ntBASIC16.24■□□□□ 0.19
PKNOX1P55347 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.24■□□□□ 0.19
PKNOX1P55347 SAPCD2P3-201ENST00000455031 850 ntBASIC16.24■□□□□ 0.19
PKNOX1P55347 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms