Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CUX1P39880 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
CUX1P39880 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CUX1P39880 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CUX1P39880 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC27.11■■□□□ 1.93
CUX1P39880 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
CUX1P39880 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC27.11■■□□□ 1.93
CUX1P39880 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CUX1P39880 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CUX1P39880 FTH1P14-201ENST00000482930 551 ntBASIC27.11■■□□□ 1.93
CUX1P39880 KRT90P-201ENST00000549264 1064 ntBASIC27.11■■□□□ 1.93
CUX1P39880 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC27.11■■□□□ 1.93
CUX1P39880 AL049840.4-201ENST00000602422 811 ntBASIC27.11■■□□□ 1.93
CUX1P39880 AC133539.2-201ENST00000604757 467 ntBASIC27.11■■□□□ 1.93
CUX1P39880 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC27.11■■□□□ 1.93
CUX1P39880 AC009542.2-202ENST00000619004 1067 ntBASIC27.11■■□□□ 1.93
CUX1P39880 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
CUX1P39880 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC27.11■■□□□ 1.93
CUX1P39880 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC27.11■■□□□ 1.93
CUX1P39880 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC27.11■■□□□ 1.93
CUX1P39880 KRT8P37-201ENST00000451609 1420 ntBASIC27.11■■□□□ 1.93
CUX1P39880 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC27.11■■□□□ 1.93
CUX1P39880 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
CUX1P39880 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
CUX1P39880 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC27.11■■□□□ 1.93
CUX1P39880 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CUX1P39880 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CUX1P39880 APOA1-205ENST00000375329 927 ntTSL 2 BASIC27.11■■□□□ 1.93
CUX1P39880 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC27.11■■□□□ 1.93
CUX1P39880 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC27.11■■□□□ 1.93
CUX1P39880 RN7SL219P-201ENST00000582872 296 ntBASIC27.11■■□□□ 1.93
CUX1P39880 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC27.11■■□□□ 1.93
CUX1P39880 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC27.1■■□□□ 1.93
CUX1P39880 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC27.1■■□□□ 1.93
CUX1P39880 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CUX1P39880 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CUX1P39880 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CUX1P39880 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC27.1■■□□□ 1.93
CUX1P39880 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC27.1■■□□□ 1.93
CUX1P39880 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC27.1■■□□□ 1.93
CUX1P39880 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
CUX1P39880 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CUX1P39880 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CUX1P39880 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
CUX1P39880 PKIG-203ENST00000372887 769 ntTSL 3 BASIC27.1■■□□□ 1.93
CUX1P39880 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
CUX1P39880 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CUX1P39880 BCRP2-202ENST00000447763 634 ntBASIC27.1■■□□□ 1.93
CUX1P39880 BCRP6-201ENST00000510112 632 ntBASIC27.1■■□□□ 1.93
CUX1P39880 BCRP7-201ENST00000511549 544 ntBASIC27.1■■□□□ 1.93
CUX1P39880 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC27.1■■□□□ 1.93
CUX1P39880 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC27.1■■□□□ 1.93
CUX1P39880 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC27.1■■□□□ 1.93
CUX1P39880 AC120045.2-201ENST00000567334 178 ntBASIC27.1■■□□□ 1.93
CUX1P39880 AC244669.2-201ENST00000612320 853 ntBASIC27.1■■□□□ 1.93
CUX1P39880 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC27.1■■□□□ 1.93
CUX1P39880 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC27.09■■□□□ 1.93
CUX1P39880 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CUX1P39880 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC27.09■■□□□ 1.93
CUX1P39880 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC27.09■■□□□ 1.93
CUX1P39880 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC27.09■■□□□ 1.93
CUX1P39880 MIR1247-201ENST00000408206 136 ntBASIC27.09■■□□□ 1.93
CUX1P39880 TOMM22P5-201ENST00000416399 439 ntBASIC27.09■■□□□ 1.93
CUX1P39880 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
CUX1P39880 DERL2-202ENST00000570848 657 ntTSL 5 BASIC27.09■■□□□ 1.93
CUX1P39880 CLUHP6-201ENST00000580789 941 ntBASIC27.09■■□□□ 1.93
CUX1P39880 AC005252.2-201ENST00000624630 1141 ntBASIC27.09■■□□□ 1.93
CUX1P39880 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CUX1P39880 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC27.09■■□□□ 1.93
CUX1P39880 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC27.09■■□□□ 1.93
CUX1P39880 AL691432.1-201ENST00000596308 1422 ntBASIC27.09■■□□□ 1.93
CUX1P39880 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CUX1P39880 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
CUX1P39880 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
CUX1P39880 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC27.08■■□□□ 1.93
CUX1P39880 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC27.08■■□□□ 1.93
CUX1P39880 EML3-217ENST00000531557 2509 ntTSL 5 BASIC27.08■■□□□ 1.93
CUX1P39880 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
CUX1P39880 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
CUX1P39880 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
CUX1P39880 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
CUX1P39880 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC27.08■■□□□ 1.93
CUX1P39880 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC27.08■■□□□ 1.93
CUX1P39880 RIT1-205ENST00000539040 919 ntTSL 2 BASIC27.08■■□□□ 1.93
CUX1P39880 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC27.08■■□□□ 1.93
CUX1P39880 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC27.08■■□□□ 1.93
CUX1P39880 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
CUX1P39880 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC27.08■■□□□ 1.93
CUX1P39880 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC27.08■■□□□ 1.93
CUX1P39880 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
CUX1P39880 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC27.08■■□□□ 1.93
CUX1P39880 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
CUX1P39880 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC27.07■■□□□ 1.92
CUX1P39880 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC27.07■■□□□ 1.92
CUX1P39880 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC27.07■■□□□ 1.92
CUX1P39880 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
CUX1P39880 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
CUX1P39880 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC27.07■■□□□ 1.92
CUX1P39880 APOC3-202ENST00000375345 604 ntTSL 5 BASIC27.07■■□□□ 1.92
CUX1P39880 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms