Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.83■□□□□ 0.12
MSX2P35548 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.83■□□□□ 0.12
MSX2P35548 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
MSX2P35548 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX2P35548 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX2P35548 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX2P35548 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
MSX2P35548 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX2P35548 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.82■□□□□ 0.12
MSX2P35548 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
MSX2P35548 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.82■□□□□ 0.12
MSX2P35548 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.82■□□□□ 0.12
MSX2P35548 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.82■□□□□ 0.12
MSX2P35548 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX2P35548 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
MSX2P35548 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX2P35548 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX2P35548 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
MSX2P35548 SIGLEC30P-201ENST00000455569 941 ntBASIC15.82■□□□□ 0.12
MSX2P35548 HOMER2P1-201ENST00000455653 964 ntBASIC15.82■□□□□ 0.12
MSX2P35548 LY6E-213ENST00000522528 606 ntTSL 3 BASIC15.82■□□□□ 0.12
MSX2P35548 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
MSX2P35548 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC15.82■□□□□ 0.12
MSX2P35548 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC15.82■□□□□ 0.12
MSX2P35548 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC15.82■□□□□ 0.12
MSX2P35548 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.82■□□□□ 0.12
MSX2P35548 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
MSX2P35548 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX2P35548 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
MSX2P35548 AC243591.1-201ENST00000452967 1364 ntBASIC15.82■□□□□ 0.12
MSX2P35548 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX2P35548 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.82■□□□□ 0.12
MSX2P35548 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.82■□□□□ 0.12
MSX2P35548 PMPCAP1-201ENST00000508114 1576 ntBASIC15.82■□□□□ 0.12
MSX2P35548 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
MSX2P35548 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX2P35548 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX2P35548 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
MSX2P35548 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX2P35548 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX2P35548 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX2P35548 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
MSX2P35548 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX2P35548 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX2P35548 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
MSX2P35548 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX2P35548 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
MSX2P35548 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.82■□□□□ 0.12
MSX2P35548 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC15.81■□□□□ 0.12
MSX2P35548 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 TERF1P1-201ENST00000311003 1181 ntBASIC15.81■□□□□ 0.12
MSX2P35548 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 RNF152P1-201ENST00000397754 604 ntBASIC15.81■□□□□ 0.12
MSX2P35548 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.81■□□□□ 0.12
MSX2P35548 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC15.81■□□□□ 0.12
MSX2P35548 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
MSX2P35548 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.81■□□□□ 0.12
MSX2P35548 AL137013.1-201ENST00000432946 1228 ntBASIC15.81■□□□□ 0.12
MSX2P35548 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
MSX2P35548 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC15.81■□□□□ 0.12
MSX2P35548 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC15.81■□□□□ 0.12
MSX2P35548 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.81■□□□□ 0.12
MSX2P35548 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.81■□□□□ 0.12
MSX2P35548 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC15.81■□□□□ 0.12
MSX2P35548 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 AP005901.3-202ENST00000581653 237 ntBASIC15.81■□□□□ 0.12
MSX2P35548 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.81■□□□□ 0.12
MSX2P35548 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.81■□□□□ 0.12
MSX2P35548 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
MSX2P35548 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.81■□□□□ 0.12
MSX2P35548 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.81■□□□□ 0.12
MSX2P35548 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
MSX2P35548 AL009178.2-201ENST00000597278 2719 ntBASIC15.81■□□□□ 0.12
MSX2P35548 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.81■□□□□ 0.12
MSX2P35548 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.8■□□□□ 0.12
MSX2P35548 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
MSX2P35548 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms