Protein–RNA interactions for Protein: P25942

CD40, Tumor necrosis factor receptor superfamily member 5, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD40P25942 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CD40P25942 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CD40P25942 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CD40P25942 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CD40P25942 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CD40P25942 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CD40P25942 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
CD40P25942 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC14.21□□□□□ -0.13
CD40P25942 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.21□□□□□ -0.13
CD40P25942 AC093214.1-201ENST00000511688 1107 ntBASIC14.21□□□□□ -0.13
CD40P25942 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CD40P25942 RNA5SP421-201ENST00000516864 134 ntBASIC14.21□□□□□ -0.13
CD40P25942 AC069120.2-201ENST00000524091 540 ntBASIC14.21□□□□□ -0.13
CD40P25942 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC14.21□□□□□ -0.13
CD40P25942 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC14.21□□□□□ -0.13
CD40P25942 SPCS2P1-201ENST00000561636 679 ntBASIC14.21□□□□□ -0.13
CD40P25942 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC14.21□□□□□ -0.13
CD40P25942 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.21□□□□□ -0.13
CD40P25942 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.21□□□□□ -0.13
CD40P25942 AL390955.2-201ENST00000603032 514 ntBASIC14.21□□□□□ -0.13
CD40P25942 FHL2-212ENST00000607522 759 ntTSL 2 BASIC14.21□□□□□ -0.13
CD40P25942 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CD40P25942 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
CD40P25942 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC14.21□□□□□ -0.13
CD40P25942 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14.21□□□□□ -0.13
CD40P25942 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC14.21□□□□□ -0.13
CD40P25942 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CD40P25942 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CD40P25942 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CD40P25942 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
CD40P25942 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
CD40P25942 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
CD40P25942 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CD40P25942 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CD40P25942 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
CD40P25942 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CD40P25942 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
CD40P25942 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CD40P25942 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CD40P25942 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CD40P25942 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
CD40P25942 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CD40P25942 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CD40P25942 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
CD40P25942 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CD40P25942 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC14.2□□□□□ -0.14
CD40P25942 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CD40P25942 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CD40P25942 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CD40P25942 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.2□□□□□ -0.14
CD40P25942 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC14.2□□□□□ -0.14
CD40P25942 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CD40P25942 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CD40P25942 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CD40P25942 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
CD40P25942 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.2□□□□□ -0.14
CD40P25942 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.2□□□□□ -0.14
CD40P25942 BASP1P1-201ENST00000430708 665 ntBASIC14.2□□□□□ -0.14
CD40P25942 AC093724.1-201ENST00000448659 1027 ntBASIC14.2□□□□□ -0.14
CD40P25942 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.2□□□□□ -0.14
CD40P25942 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CD40P25942 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC14.2□□□□□ -0.14
CD40P25942 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.2□□□□□ -0.14
CD40P25942 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC14.2□□□□□ -0.14
CD40P25942 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC14.2□□□□□ -0.14
CD40P25942 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.2□□□□□ -0.14
CD40P25942 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC14.2□□□□□ -0.14
CD40P25942 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.2□□□□□ -0.14
CD40P25942 AL096865.1-201ENST00000606796 927 ntBASIC14.2□□□□□ -0.14
CD40P25942 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC14.2□□□□□ -0.14
CD40P25942 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CD40P25942 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CD40P25942 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CD40P25942 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CD40P25942 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.2□□□□□ -0.14
CD40P25942 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CD40P25942 FO538757.1-201ENST00000623083 1397 ntBASIC14.2□□□□□ -0.14
CD40P25942 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC14.2□□□□□ -0.14
CD40P25942 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CD40P25942 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CD40P25942 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CD40P25942 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CD40P25942 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CD40P25942 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CD40P25942 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CD40P25942 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
CD40P25942 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CD40P25942 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CD40P25942 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
CD40P25942 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CD40P25942 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CD40P25942 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CD40P25942 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CD40P25942 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CD40P25942 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CD40P25942 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC14.19□□□□□ -0.14
CD40P25942 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CD40P25942 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CD40P25942 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CD40P25942 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms