Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC18.29■□□□□ 0.52
TPM1P09493 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM1P09493 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TPM1P09493 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.29■□□□□ 0.52
TPM1P09493 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.29■□□□□ 0.52
TPM1P09493 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TPM1P09493 AC016734.2-201ENST00000624325 1377 ntBASIC18.29■□□□□ 0.52
TPM1P09493 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM1P09493 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC18.29■□□□□ 0.52
TPM1P09493 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM1P09493 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM1P09493 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM1P09493 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM1P09493 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
TPM1P09493 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC18.28■□□□□ 0.52
TPM1P09493 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
TPM1P09493 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM1P09493 AC006449.6-201ENST00000612330 2296 ntBASIC18.28■□□□□ 0.52
TPM1P09493 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
TPM1P09493 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM1P09493 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
TPM1P09493 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
TPM1P09493 AC211429.1-201ENST00000415277 523 ntBASIC18.28■□□□□ 0.52
TPM1P09493 POM121L3P-201ENST00000419331 1163 ntBASIC18.28■□□□□ 0.52
TPM1P09493 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
TPM1P09493 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.28■□□□□ 0.52
TPM1P09493 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.28■□□□□ 0.52
TPM1P09493 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
TPM1P09493 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.28■□□□□ 0.52
TPM1P09493 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM1P09493 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TPM1P09493 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.28■□□□□ 0.52
TPM1P09493 AL121956.5-201ENST00000625261 221 ntBASIC18.28■□□□□ 0.52
TPM1P09493 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM1P09493 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM1P09493 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TPM1P09493 GGT4P-201ENST00000623672 1708 ntBASIC18.28■□□□□ 0.52
TPM1P09493 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM1P09493 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC18.28■□□□□ 0.52
TPM1P09493 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TPM1P09493 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM1P09493 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM1P09493 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC18.28■□□□□ 0.52
TPM1P09493 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC18.28■□□□□ 0.52
TPM1P09493 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TPM1P09493 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM1P09493 TOP3BP1-201ENST00000420768 1380 ntBASIC18.28■□□□□ 0.52
TPM1P09493 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM1P09493 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM1P09493 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC18.28■□□□□ 0.52
TPM1P09493 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TPM1P09493 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.27■□□□□ 0.52
TPM1P09493 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
TPM1P09493 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
TPM1P09493 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.27■□□□□ 0.52
TPM1P09493 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TPM1P09493 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC18.27■□□□□ 0.52
TPM1P09493 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TPM1P09493 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TPM1P09493 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TPM1P09493 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TPM1P09493 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TPM1P09493 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TPM1P09493 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TPM1P09493 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TPM1P09493 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TPM1P09493 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.27■□□□□ 0.52
TPM1P09493 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TPM1P09493 DRAXINP1-201ENST00000437611 948 ntBASIC18.27■□□□□ 0.52
TPM1P09493 TSSC2-201ENST00000450217 709 ntBASIC18.27■□□□□ 0.52
TPM1P09493 TOB2P1-201ENST00000469761 992 ntBASIC18.27■□□□□ 0.52
TPM1P09493 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.27■□□□□ 0.52
TPM1P09493 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.27■□□□□ 0.52
TPM1P09493 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.27■□□□□ 0.52
TPM1P09493 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.27■□□□□ 0.52
TPM1P09493 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
TPM1P09493 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.27■□□□□ 0.52
TPM1P09493 AL590326.2-201ENST00000625139 305 ntBASIC18.27■□□□□ 0.52
TPM1P09493 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
TPM1P09493 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TPM1P09493 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TPM1P09493 PCDHA3-202ENST00000532566 4594 ntBASIC18.27■□□□□ 0.51
TPM1P09493 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
TPM1P09493 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TPM1P09493 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
TPM1P09493 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TPM1P09493 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
TPM1P09493 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.26■□□□□ 0.51
TPM1P09493 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TPM1P09493 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.26■□□□□ 0.51
TPM1P09493 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TPM1P09493 AL590787.1-201ENST00000568856 1315 ntBASIC18.26■□□□□ 0.51
TPM1P09493 NID2-208ENST00000617139 3827 ntTSL 5 BASIC18.26■□□□□ 0.51
TPM1P09493 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TPM1P09493 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TPM1P09493 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TPM1P09493 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TPM1P09493 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.26■□□□□ 0.51
TPM1P09493 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TPM1P09493 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms