Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP28Q96RU2 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.91■□□□□ 0.62
USP28Q96RU2 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP28Q96RU2 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC18.91■□□□□ 0.62
USP28Q96RU2 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC18.91■□□□□ 0.62
USP28Q96RU2 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC18.91■□□□□ 0.62
USP28Q96RU2 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP28Q96RU2 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP28Q96RU2 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.91■□□□□ 0.62
USP28Q96RU2 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
USP28Q96RU2 RNU1-129P-201ENST00000384064 167 ntBASIC18.91■□□□□ 0.62
USP28Q96RU2 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP28Q96RU2 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.91■□□□□ 0.62
USP28Q96RU2 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP28Q96RU2 CXCL1P1-201ENST00000502804 216 ntBASIC18.91■□□□□ 0.62
USP28Q96RU2 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP28Q96RU2 AP002469.2-201ENST00000531724 424 ntBASIC18.91■□□□□ 0.62
USP28Q96RU2 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.91■□□□□ 0.62
USP28Q96RU2 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP28Q96RU2 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.91■□□□□ 0.62
USP28Q96RU2 U1.21-201ENST00000580816 167 ntBASIC18.91■□□□□ 0.62
USP28Q96RU2 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.91■□□□□ 0.62
USP28Q96RU2 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
USP28Q96RU2 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
USP28Q96RU2 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP28Q96RU2 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP28Q96RU2 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
USP28Q96RU2 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.91■□□□□ 0.62
USP28Q96RU2 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP28Q96RU2 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC18.91■□□□□ 0.62
USP28Q96RU2 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP28Q96RU2 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP28Q96RU2 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC18.9■□□□□ 0.62
USP28Q96RU2 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP28Q96RU2 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP28Q96RU2 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP28Q96RU2 RPS2P28-201ENST00000314255 741 ntBASIC18.9■□□□□ 0.62
USP28Q96RU2 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP28Q96RU2 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP28Q96RU2 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC18.9■□□□□ 0.62
USP28Q96RU2 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.9■□□□□ 0.62
USP28Q96RU2 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.9■□□□□ 0.62
USP28Q96RU2 IGLL3P-201ENST00000412472 434 ntBASIC18.9■□□□□ 0.62
USP28Q96RU2 AC098831.1-202ENST00000438821 336 ntBASIC18.9■□□□□ 0.62
USP28Q96RU2 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
USP28Q96RU2 AC108751.1-201ENST00000490852 363 ntBASIC18.9■□□□□ 0.62
USP28Q96RU2 RNA5SP419-201ENST00000515908 135 ntBASIC18.9■□□□□ 0.62
USP28Q96RU2 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP28Q96RU2 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18.9■□□□□ 0.62
USP28Q96RU2 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP28Q96RU2 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP28Q96RU2 CDC14C-201ENST00000428251 1719 ntBASIC18.9■□□□□ 0.62
USP28Q96RU2 AC005622.1-201ENST00000636801 1703 ntBASIC18.9■□□□□ 0.62
USP28Q96RU2 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP28Q96RU2 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.9■□□□□ 0.62
USP28Q96RU2 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP28Q96RU2 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP28Q96RU2 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
USP28Q96RU2 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP28Q96RU2 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP28Q96RU2 LINC00554-201ENST00000564841 3011 ntBASIC18.9■□□□□ 0.62
USP28Q96RU2 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC18.9■□□□□ 0.62
USP28Q96RU2 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
USP28Q96RU2 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
USP28Q96RU2 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.62
USP28Q96RU2 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
USP28Q96RU2 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
USP28Q96RU2 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.62
USP28Q96RU2 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
USP28Q96RU2 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP28Q96RU2 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP28Q96RU2 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP28Q96RU2 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP28Q96RU2 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP28Q96RU2 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP28Q96RU2 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP28Q96RU2 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP28Q96RU2 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP28Q96RU2 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC18.89■□□□□ 0.61
USP28Q96RU2 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.89■□□□□ 0.61
USP28Q96RU2 AL031284.1-201ENST00000419297 478 ntBASIC18.89■□□□□ 0.61
USP28Q96RU2 PRSS29P-201ENST00000440800 595 ntBASIC18.89■□□□□ 0.61
USP28Q96RU2 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
USP28Q96RU2 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.89■□□□□ 0.61
USP28Q96RU2 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.89■□□□□ 0.61
USP28Q96RU2 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.89■□□□□ 0.61
USP28Q96RU2 MIR4751-201ENST00000578027 74 ntBASIC18.89■□□□□ 0.61
USP28Q96RU2 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC18.89■□□□□ 0.61
USP28Q96RU2 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP28Q96RU2 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP28Q96RU2 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP28Q96RU2 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
USP28Q96RU2 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP28Q96RU2 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP28Q96RU2 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC18.89■□□□□ 0.61
USP28Q96RU2 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC18.89■□□□□ 0.61
USP28Q96RU2 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP28Q96RU2 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP28Q96RU2 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USP28Q96RU2 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms