Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC12.45□□□□□ -0.42
LINC00477Q96M19 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00477Q96M19 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00477Q96M19 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00477Q96M19 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC12.45□□□□□ -0.42
LINC00477Q96M19 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00477Q96M19 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
LINC00477Q96M19 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00477Q96M19 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00477Q96M19 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00477Q96M19 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00477Q96M19 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
LINC00477Q96M19 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 PCGF3-213ENST00000620529 1899 ntBASIC12.44□□□□□ -0.42
LINC00477Q96M19 AC046158.3-201ENST00000624947 2558 ntBASIC12.44□□□□□ -0.42
LINC00477Q96M19 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 AL365203.3-201ENST00000609742 2057 ntBASIC12.44□□□□□ -0.42
LINC00477Q96M19 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 AGK-211ENST00000629555 2765 ntTSL 5 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 AC006449.6-201ENST00000612330 2296 ntBASIC12.44□□□□□ -0.42
LINC00477Q96M19 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 HARS-203ENST00000431330 1774 ntTSL 2 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 HCG4-201ENST00000418983 998 ntBASIC12.44□□□□□ -0.42
LINC00477Q96M19 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 STARD13-205ENST00000439831 945 ntTSL 2 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 AC005412.3-201ENST00000580309 715 ntBASIC12.44□□□□□ -0.42
LINC00477Q96M19 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 CYP2A7P1-201ENST00000595391 815 ntBASIC12.44□□□□□ -0.42
LINC00477Q96M19 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 AC020765.3-201ENST00000613051 740 ntBASIC12.44□□□□□ -0.42
LINC00477Q96M19 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 AC005052.1-201ENST00000625181 2492 ntBASIC12.44□□□□□ -0.42
LINC00477Q96M19 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
LINC00477Q96M19 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC12.44□□□□□ -0.42
LINC00477Q96M19 ABR-203ENST00000536794 2213 ntTSL 2 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 GPAA1P2-202ENST00000606848 1787 ntBASIC12.43□□□□□ -0.42
LINC00477Q96M19 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC12.43□□□□□ -0.42
LINC00477Q96M19 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
LINC00477Q96M19 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 DFFB-203ENST00000341385 572 ntTSL 5 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 LAGE3P1-201ENST00000425356 484 ntBASIC12.43□□□□□ -0.42
LINC00477Q96M19 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC12.43□□□□□ -0.42
LINC00477Q96M19 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC12.43□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms