Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AF228730.8-201ENST00000642140 221 ntBASIC5.15□□□□□ -1.59
SYNE1Q8NF91 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 SOCS6-201ENST00000397942 5848 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 BDNF-208ENST00000418212 4125 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 AC092364.2-201ENST00000596710 2692 ntBASIC5.14□□□□□ -1.59
SYNE1Q8NF91 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 HLA-DQB1-201ENST00000374943 1656 ntBASIC5.14□□□□□ -1.59
SYNE1Q8NF91 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 TUBB3P1-201ENST00000405796 1332 ntBASIC5.14□□□□□ -1.59
SYNE1Q8NF91 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 AC103564.2-201ENST00000432853 1299 ntBASIC5.14□□□□□ -1.59
SYNE1Q8NF91 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 PUDP-206ENST00000540122 825 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 KRT8P48-201ENST00000515599 1220 ntBASIC5.14□□□□□ -1.59
SYNE1Q8NF91 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 AC026120.1-201ENST00000611536 926 ntBASIC5.14□□□□□ -1.59
SYNE1Q8NF91 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 AC007064.4-201ENST00000637740 555 ntBASIC5.14□□□□□ -1.59
SYNE1Q8NF91 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 CXCL1P1-201ENST00000502804 216 ntBASIC5.14□□□□□ -1.59
SYNE1Q8NF91 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SYNE1Q8NF91 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms