Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 WDR88-203ENST00000592765 651 ntTSL 5 BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 AC099063.4-201ENST00000641099 1602 ntBASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 AC073347.1-201ENST00000421633 2643 ntBASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 AL135999.2-201ENST00000622438 1686 ntBASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ZNF540Q8NDQ6 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 TSPY19P-201ENST00000418461 509 ntBASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 TSPY18P-201ENST00000441642 509 ntBASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
ZNF540Q8NDQ6 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.06
ZNF540Q8NDQ6 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 FUT8-AS1-201ENST00000621019 1521 ntBASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ZNF540Q8NDQ6 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms