Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC13.82□□□□□ -0.2
PDLIM3Q53GG5 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 WT1-209ENST00000530998 2421 ntTSL 2 BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 GK-202ENST00000378941 458 ntTSL 3 BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 AC005034.1-201ENST00000426657 489 ntBASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 AP002472.1-201ENST00000577490 586 ntBASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 AL035252.4-201ENST00000624174 288 ntBASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM3Q53GG5 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 GPR89P-201ENST00000407924 1495 ntBASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 AC009336.1-201ENST00000608941 1553 ntBASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 AL162727.3-201ENST00000635661 2787 ntBASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 AC006449.5-201ENST00000610658 2098 ntBASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 AL135999.2-201ENST00000622438 1686 ntBASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 AC132008.2-207ENST00000454517 770 ntBASIC13.8□□□□□ -0.2
PDLIM3Q53GG5 TAF8-206ENST00000472818 719 ntTSL 2 BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms