Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC18.09■□□□□ 0.49
CLCN3P51790 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC18.09■□□□□ 0.49
CLCN3P51790 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCN3P51790 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCN3P51790 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
CLCN3P51790 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCN3P51790 AC241585.1-201ENST00000433527 519 ntBASIC18.09■□□□□ 0.49
CLCN3P51790 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC18.09■□□□□ 0.49
CLCN3P51790 TSPY16P-201ENST00000449843 468 ntBASIC18.09■□□□□ 0.49
CLCN3P51790 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCN3P51790 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLCN3P51790 AC138761.1-201ENST00000584393 385 ntBASIC18.09■□□□□ 0.49
CLCN3P51790 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
CLCN3P51790 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCN3P51790 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCN3P51790 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
CLCN3P51790 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.09■□□□□ 0.49
CLCN3P51790 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLCN3P51790 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCN3P51790 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCN3P51790 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCN3P51790 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCN3P51790 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCN3P51790 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CLCN3P51790 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.09■□□□□ 0.49
CLCN3P51790 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CLCN3P51790 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18.08■□□□□ 0.49
CLCN3P51790 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLCN3P51790 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CLCN3P51790 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLCN3P51790 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLCN3P51790 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CLCN3P51790 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCN3P51790 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCN3P51790 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCN3P51790 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CLCN3P51790 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCN3P51790 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCN3P51790 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CLCN3P51790 AC004890.2-204ENST00000481968 304 ntBASIC18.08■□□□□ 0.48
CLCN3P51790 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC18.08■□□□□ 0.48
CLCN3P51790 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC18.08■□□□□ 0.48
CLCN3P51790 AC105021.1-202ENST00000570572 669 ntBASIC18.08■□□□□ 0.48
CLCN3P51790 RN7SL204P-201ENST00000582831 262 ntBASIC18.08■□□□□ 0.48
CLCN3P51790 AL590560.3-201ENST00000623350 461 ntBASIC18.08■□□□□ 0.48
CLCN3P51790 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.08■□□□□ 0.48
CLCN3P51790 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCN3P51790 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CLCN3P51790 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCN3P51790 GGT3P-204ENST00000453783 1664 ntBASIC18.08■□□□□ 0.48
CLCN3P51790 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.08■□□□□ 0.48
CLCN3P51790 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.48
CLCN3P51790 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC18.08■□□□□ 0.48
CLCN3P51790 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCN3P51790 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCN3P51790 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCN3P51790 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCN3P51790 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC18.08■□□□□ 0.48
CLCN3P51790 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CLCN3P51790 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCN3P51790 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CLCN3P51790 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC18.07■□□□□ 0.48
CLCN3P51790 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.07■□□□□ 0.48
CLCN3P51790 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCN3P51790 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCN3P51790 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCN3P51790 AC106886.4-201ENST00000623557 2502 ntBASIC18.07■□□□□ 0.48
CLCN3P51790 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
CLCN3P51790 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CLCN3P51790 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CLCN3P51790 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCN3P51790 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC18.07■□□□□ 0.48
CLCN3P51790 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCN3P51790 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCN3P51790 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCN3P51790 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCN3P51790 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.07■□□□□ 0.48
CLCN3P51790 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCN3P51790 TSSK5P-201ENST00000423978 907 ntBASIC18.07■□□□□ 0.48
CLCN3P51790 AC002472.2-201ENST00000442739 958 ntBASIC18.07■□□□□ 0.48
CLCN3P51790 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC18.07■□□□□ 0.48
CLCN3P51790 LITAF-210ENST00000571976 548 ntTSL 2 BASIC18.07■□□□□ 0.48
CLCN3P51790 LITAF-214ENST00000574703 486 ntTSL 2 BASIC18.07■□□□□ 0.48
CLCN3P51790 RN7SL828P-201ENST00000607615 303 ntBASIC18.07■□□□□ 0.48
CLCN3P51790 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.07■□□□□ 0.48
CLCN3P51790 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCN3P51790 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCN3P51790 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.07■□□□□ 0.48
CLCN3P51790 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
CLCN3P51790 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
CLCN3P51790 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CLCN3P51790 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCN3P51790 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCN3P51790 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCN3P51790 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCN3P51790 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CLCN3P51790 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.07■□□□□ 0.48
CLCN3P51790 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CLCN3P51790 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CLCN3P51790 AL035456.1-201ENST00000456064 1369 ntBASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms