Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC19.91■□□□□ 0.78
COL4A1P02462 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL4A1P02462 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC19.91■□□□□ 0.78
COL4A1P02462 MYCLP2-201ENST00000449268 967 ntBASIC19.91■□□□□ 0.78
COL4A1P02462 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC19.91■□□□□ 0.78
COL4A1P02462 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC19.91■□□□□ 0.78
COL4A1P02462 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC19.91■□□□□ 0.78
COL4A1P02462 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A1P02462 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
COL4A1P02462 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC19.9■□□□□ 0.78
COL4A1P02462 AC022211.2-201ENST00000585075 2527 ntBASIC19.9■□□□□ 0.78
COL4A1P02462 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A1P02462 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
COL4A1P02462 LETM1P2-201ENST00000597330 2178 ntBASIC19.9■□□□□ 0.78
COL4A1P02462 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A1P02462 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC19.9■□□□□ 0.78
COL4A1P02462 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A1P02462 CDC14C-201ENST00000428251 1719 ntBASIC19.9■□□□□ 0.78
COL4A1P02462 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A1P02462 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A1P02462 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A1P02462 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
COL4A1P02462 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A1P02462 AC098614.1-201ENST00000368528 745 ntBASIC19.9■□□□□ 0.78
COL4A1P02462 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
COL4A1P02462 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC19.9■□□□□ 0.78
COL4A1P02462 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC19.9■□□□□ 0.78
COL4A1P02462 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC19.9■□□□□ 0.78
COL4A1P02462 AC026979.3-201ENST00000607315 403 ntBASIC19.9■□□□□ 0.78
COL4A1P02462 MIR6752-201ENST00000618442 71 ntBASIC19.9■□□□□ 0.78
COL4A1P02462 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL4A1P02462 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.78
COL4A1P02462 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.89■□□□□ 0.78
COL4A1P02462 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
COL4A1P02462 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
COL4A1P02462 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.89■□□□□ 0.78
COL4A1P02462 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A1P02462 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A1P02462 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A1P02462 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A1P02462 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A1P02462 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC19.89■□□□□ 0.77
COL4A1P02462 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A1P02462 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.89■□□□□ 0.77
COL4A1P02462 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A1P02462 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC19.89■□□□□ 0.77
COL4A1P02462 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC19.89■□□□□ 0.77
COL4A1P02462 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC19.89■□□□□ 0.77
COL4A1P02462 KRT18P64-201ENST00000434946 1219 ntBASIC19.89■□□□□ 0.77
COL4A1P02462 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC19.89■□□□□ 0.77
COL4A1P02462 RN7SL752P-201ENST00000463779 287 ntBASIC19.89■□□□□ 0.77
COL4A1P02462 SDHAP3-202ENST00000515467 728 ntBASIC19.89■□□□□ 0.77
COL4A1P02462 FUZ-207ENST00000526575 482 ntTSL 4 BASIC19.89■□□□□ 0.77
COL4A1P02462 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
COL4A1P02462 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC19.89■□□□□ 0.77
COL4A1P02462 AL359881.2-201ENST00000602973 570 ntBASIC19.89■□□□□ 0.77
COL4A1P02462 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
COL4A1P02462 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A1P02462 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC19.89■□□□□ 0.77
COL4A1P02462 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
COL4A1P02462 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
COL4A1P02462 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
COL4A1P02462 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A1P02462 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A1P02462 PKD1P6-201ENST00000343738 4769 ntBASIC19.88■□□□□ 0.77
COL4A1P02462 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A1P02462 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A1P02462 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A1P02462 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A1P02462 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A1P02462 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A1P02462 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A1P02462 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
COL4A1P02462 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A1P02462 APOC4-201ENST00000591600 348 ntTSL 3 BASIC19.88■□□□□ 0.77
COL4A1P02462 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.88■□□□□ 0.77
COL4A1P02462 Z97205.2-201ENST00000564697 1639 ntBASIC19.88■□□□□ 0.77
COL4A1P02462 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A1P02462 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC19.88■□□□□ 0.77
COL4A1P02462 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A1P02462 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
COL4A1P02462 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A1P02462 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A1P02462 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A1P02462 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A1P02462 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A1P02462 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A1P02462 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A1P02462 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
COL4A1P02462 GRN-214ENST00000589265 1632 ntTSL 5 BASIC19.88■□□□□ 0.77
COL4A1P02462 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A1P02462 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A1P02462 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
COL4A1P02462 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC19.87■□□□□ 0.77
COL4A1P02462 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC19.87■□□□□ 0.77
COL4A1P02462 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A1P02462 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC19.87■□□□□ 0.77
COL4A1P02462 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms