Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDB3O75112 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.56■□□□□ 0.08
LDB3O75112 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC15.56■□□□□ 0.08
LDB3O75112 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDB3O75112 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDB3O75112 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.56■□□□□ 0.08
LDB3O75112 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
LDB3O75112 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDB3O75112 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
LDB3O75112 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDB3O75112 KRT18P13-201ENST00000400056 1290 ntBASIC15.56■□□□□ 0.08
LDB3O75112 AL355306.1-201ENST00000415580 579 ntBASIC15.56■□□□□ 0.08
LDB3O75112 AL671277.1-201ENST00000429656 993 ntBASIC15.56■□□□□ 0.08
LDB3O75112 MKNK2P1-201ENST00000437526 628 ntBASIC15.56■□□□□ 0.08
LDB3O75112 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC15.56■□□□□ 0.08
LDB3O75112 CEND1P1-201ENST00000451006 455 ntBASIC15.56■□□□□ 0.08
LDB3O75112 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.56■□□□□ 0.08
LDB3O75112 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDB3O75112 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.56■□□□□ 0.08
LDB3O75112 RARRES2P8-201ENST00000566335 367 ntBASIC15.56■□□□□ 0.08
LDB3O75112 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.56■□□□□ 0.08
LDB3O75112 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC15.56■□□□□ 0.08
LDB3O75112 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.56■□□□□ 0.08
LDB3O75112 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.56■□□□□ 0.08
LDB3O75112 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.56■□□□□ 0.08
LDB3O75112 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC15.56■□□□□ 0.08
LDB3O75112 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDB3O75112 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDB3O75112 WASH6P-202ENST00000359512 1437 ntBASIC15.56■□□□□ 0.08
LDB3O75112 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
LDB3O75112 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDB3O75112 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDB3O75112 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
LDB3O75112 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LDB3O75112 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.56■□□□□ 0.08
LDB3O75112 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
LDB3O75112 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDB3O75112 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.56■□□□□ 0.08
LDB3O75112 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDB3O75112 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
LDB3O75112 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
LDB3O75112 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDB3O75112 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDB3O75112 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
LDB3O75112 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
LDB3O75112 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.56■□□□□ 0.08
LDB3O75112 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
LDB3O75112 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
LDB3O75112 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
LDB3O75112 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LDB3O75112 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
LDB3O75112 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LDB3O75112 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LDB3O75112 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LDB3O75112 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LDB3O75112 ELL2P1-201ENST00000413990 1906 ntBASIC15.55■□□□□ 0.08
LDB3O75112 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.55■□□□□ 0.08
LDB3O75112 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
LDB3O75112 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LDB3O75112 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.55■□□□□ 0.08
LDB3O75112 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LDB3O75112 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
LDB3O75112 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LDB3O75112 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.55■□□□□ 0.08
LDB3O75112 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.55■□□□□ 0.08
LDB3O75112 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LDB3O75112 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LDB3O75112 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LDB3O75112 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.55■□□□□ 0.08
LDB3O75112 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.55■□□□□ 0.08
LDB3O75112 KRT18P34-201ENST00000488218 1270 ntBASIC15.55■□□□□ 0.08
LDB3O75112 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.55■□□□□ 0.08
LDB3O75112 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.55■□□□□ 0.08
LDB3O75112 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.55■□□□□ 0.08
LDB3O75112 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LDB3O75112 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.55■□□□□ 0.08
LDB3O75112 MIR4469-201ENST00000583919 79 ntBASIC15.55■□□□□ 0.08
LDB3O75112 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.55■□□□□ 0.08
LDB3O75112 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LDB3O75112 AC020765.3-201ENST00000613051 740 ntBASIC15.55■□□□□ 0.08
LDB3O75112 AC023511.2-201ENST00000618803 211 ntBASIC15.55■□□□□ 0.08
LDB3O75112 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LDB3O75112 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.55■□□□□ 0.08
LDB3O75112 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
LDB3O75112 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LDB3O75112 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.55■□□□□ 0.08
LDB3O75112 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
LDB3O75112 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LDB3O75112 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LDB3O75112 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LDB3O75112 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
LDB3O75112 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
LDB3O75112 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
LDB3O75112 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LDB3O75112 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LDB3O75112 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
LDB3O75112 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LDB3O75112 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
LDB3O75112 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
LDB3O75112 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms