Protein–RNA interactions for Protein: O43364

HOXA2, Homeobox protein Hox-A2, humanhuman

Predictions only

Length 376 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA2O43364 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXA2O43364 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HOXA2O43364 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HOXA2O43364 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXA2O43364 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXA2O43364 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
HOXA2O43364 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXA2O43364 SPDYE19P-201ENST00000338590 713 ntBASIC17.57■□□□□ 0.4
HOXA2O43364 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.57■□□□□ 0.4
HOXA2O43364 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXA2O43364 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC17.57■□□□□ 0.4
HOXA2O43364 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXA2O43364 AP006294.1-201ENST00000415407 339 ntBASIC17.57■□□□□ 0.4
HOXA2O43364 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HOXA2O43364 IFNA4-201ENST00000421715 978 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
HOXA2O43364 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.57■□□□□ 0.4
HOXA2O43364 AC044860.1-202ENST00000559481 777 ntBASIC17.57■□□□□ 0.4
HOXA2O43364 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.57■□□□□ 0.4
HOXA2O43364 AL359881.2-201ENST00000602973 570 ntBASIC17.57■□□□□ 0.4
HOXA2O43364 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXA2O43364 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXA2O43364 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HOXA2O43364 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HOXA2O43364 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXA2O43364 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXA2O43364 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HOXA2O43364 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.57■□□□□ 0.4
HOXA2O43364 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.57■□□□□ 0.4
HOXA2O43364 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.56■□□□□ 0.4
HOXA2O43364 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HOXA2O43364 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXA2O43364 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HOXA2O43364 PP12613-201ENST00000424958 2230 ntBASIC17.56■□□□□ 0.4
HOXA2O43364 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXA2O43364 GGT4P-201ENST00000623672 1708 ntBASIC17.56■□□□□ 0.4
HOXA2O43364 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.56■□□□□ 0.4
HOXA2O43364 AC141586.5-201ENST00000624546 2050 ntBASIC17.56■□□□□ 0.4
HOXA2O43364 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXA2O43364 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXA2O43364 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
HOXA2O43364 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.56■□□□□ 0.4
HOXA2O43364 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC17.56■□□□□ 0.4
HOXA2O43364 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
HOXA2O43364 GNAQP1-201ENST00000444815 1067 ntBASIC17.56■□□□□ 0.4
HOXA2O43364 AC011495.1-201ENST00000498085 584 ntBASIC17.56■□□□□ 0.4
HOXA2O43364 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.56■□□□□ 0.4
HOXA2O43364 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
HOXA2O43364 AL365330.1-201ENST00000607459 531 ntBASIC17.56■□□□□ 0.4
HOXA2O43364 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17.56■□□□□ 0.4
HOXA2O43364 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.56■□□□□ 0.4
HOXA2O43364 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HOXA2O43364 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HOXA2O43364 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXA2O43364 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXA2O43364 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXA2O43364 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
HOXA2O43364 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.56■□□□□ 0.4
HOXA2O43364 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXA2O43364 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HOXA2O43364 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXA2O43364 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.55■□□□□ 0.4
HOXA2O43364 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXA2O43364 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
HOXA2O43364 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXA2O43364 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HOXA2O43364 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
HOXA2O43364 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXA2O43364 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HOXA2O43364 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC17.55■□□□□ 0.4
HOXA2O43364 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXA2O43364 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
HOXA2O43364 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXA2O43364 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXA2O43364 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXA2O43364 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC17.55■□□□□ 0.4
HOXA2O43364 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.55■□□□□ 0.4
HOXA2O43364 AC055876.2-201ENST00000531834 546 ntBASIC17.55■□□□□ 0.4
HOXA2O43364 RAB35-202ENST00000534951 939 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXA2O43364 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXA2O43364 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HOXA2O43364 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXA2O43364 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXA2O43364 AC018470.1-201ENST00000624790 3129 ntBASIC17.55■□□□□ 0.4
HOXA2O43364 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HOXA2O43364 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.55■□□□□ 0.4
HOXA2O43364 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.55■□□□□ 0.4
HOXA2O43364 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HOXA2O43364 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
HOXA2O43364 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HOXA2O43364 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.55■□□□□ 0.4
HOXA2O43364 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.54■□□□□ 0.4
HOXA2O43364 PCGF3-213ENST00000620529 1899 ntBASIC17.54■□□□□ 0.4
HOXA2O43364 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
HOXA2O43364 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXA2O43364 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HOXA2O43364 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXA2O43364 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
HOXA2O43364 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.54■□□□□ 0.4
HOXA2O43364 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HOXA2O43364 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms