Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
PDLIM1O00151 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
PDLIM1O00151 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.83■□□□□ 0.12
PDLIM1O00151 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
PDLIM1O00151 AC004817.3-201ENST00000602957 2129 ntBASIC15.83■□□□□ 0.12
PDLIM1O00151 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
PDLIM1O00151 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.83■□□□□ 0.12
PDLIM1O00151 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PDLIM1O00151 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC15.83■□□□□ 0.12
PDLIM1O00151 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PDLIM1O00151 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
PDLIM1O00151 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC15.83■□□□□ 0.12
PDLIM1O00151 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PDLIM1O00151 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC15.82■□□□□ 0.12
PDLIM1O00151 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC15.82■□□□□ 0.12
PDLIM1O00151 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC15.82■□□□□ 0.12
PDLIM1O00151 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
PDLIM1O00151 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.82■□□□□ 0.12
PDLIM1O00151 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC15.82■□□□□ 0.12
PDLIM1O00151 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
PDLIM1O00151 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
PDLIM1O00151 KRT18P56-201ENST00000507275 550 ntBASIC15.82■□□□□ 0.12
PDLIM1O00151 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC15.82■□□□□ 0.12
PDLIM1O00151 AP005901.3-202ENST00000581653 237 ntBASIC15.82■□□□□ 0.12
PDLIM1O00151 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC15.82■□□□□ 0.12
PDLIM1O00151 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
PDLIM1O00151 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC15.82■□□□□ 0.12
PDLIM1O00151 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.82■□□□□ 0.12
PDLIM1O00151 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.82■□□□□ 0.12
PDLIM1O00151 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
PDLIM1O00151 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
PDLIM1O00151 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
PDLIM1O00151 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
PDLIM1O00151 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.82■□□□□ 0.12
PDLIM1O00151 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
PDLIM1O00151 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
PDLIM1O00151 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM1O00151 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM1O00151 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.81■□□□□ 0.12
PDLIM1O00151 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM1O00151 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC15.81■□□□□ 0.12
PDLIM1O00151 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM1O00151 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM1O00151 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM1O00151 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.81■□□□□ 0.12
PDLIM1O00151 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
PDLIM1O00151 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PDLIM1O00151 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM1O00151 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC15.81■□□□□ 0.12
PDLIM1O00151 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
PDLIM1O00151 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
PDLIM1O00151 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PDLIM1O00151 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC15.81■□□□□ 0.12
PDLIM1O00151 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC15.81■□□□□ 0.12
PDLIM1O00151 LINC00265-3P-201ENST00000447588 903 ntBASIC15.81■□□□□ 0.12
PDLIM1O00151 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
PDLIM1O00151 AC091607.1-201ENST00000490318 1060 ntBASIC15.81■□□□□ 0.12
PDLIM1O00151 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
PDLIM1O00151 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
PDLIM1O00151 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.81■□□□□ 0.12
PDLIM1O00151 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC15.81■□□□□ 0.12
PDLIM1O00151 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC15.81■□□□□ 0.12
PDLIM1O00151 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM1O00151 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM1O00151 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC15.81■□□□□ 0.12
PDLIM1O00151 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM1O00151 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.81■□□□□ 0.12
PDLIM1O00151 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM1O00151 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM1O00151 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM1O00151 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM1O00151 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
PDLIM1O00151 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms