Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 POU5F1P6-201ENST00000466990 990 ntBASIC17.63■□□□□ 0.41
SIX4Q9UIU6 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 AP001059.3-201ENST00000619053 235 ntBASIC17.63■□□□□ 0.41
SIX4Q9UIU6 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SIX4Q9UIU6 AC099398.1-201ENST00000567919 2776 ntBASIC17.62■□□□□ 0.41
SIX4Q9UIU6 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 PMS2P2-201ENST00000425039 1128 ntBASIC17.62■□□□□ 0.41
SIX4Q9UIU6 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 AL512356.2-201ENST00000546955 174 ntBASIC17.62■□□□□ 0.41
SIX4Q9UIU6 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SIX4Q9UIU6 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 FAM220BP-201ENST00000377689 816 ntBASIC17.61■□□□□ 0.41
SIX4Q9UIU6 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 RARRES2P9-201ENST00000565168 469 ntBASIC17.61■□□□□ 0.41
SIX4Q9UIU6 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.61■□□□□ 0.41
SIX4Q9UIU6 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 AC079328.2-201ENST00000561241 3354 ntBASIC17.6■□□□□ 0.41
SIX4Q9UIU6 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 AL662844.4-201ENST00000606367 2838 ntBASIC17.6■□□□□ 0.41
SIX4Q9UIU6 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SIX4Q9UIU6 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms