Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 AC145285.3-201ENST00000564603 959 ntBASIC17.13■□□□□ 0.33
PCDH9Q9HC56 MIR4751-201ENST00000578027 74 ntBASIC17.13■□□□□ 0.33
PCDH9Q9HC56 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDH9Q9HC56 AC104109.2-201ENST00000602919 1418 ntBASIC17.13■□□□□ 0.33
PCDH9Q9HC56 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 AL353732.1-201ENST00000569618 1459 ntBASIC17.12■□□□□ 0.33
PCDH9Q9HC56 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 PCGF3-213ENST00000620529 1899 ntBASIC17.12■□□□□ 0.33
PCDH9Q9HC56 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 PRSS29P-201ENST00000440800 595 ntBASIC17.12■□□□□ 0.33
PCDH9Q9HC56 POU5F1P6-201ENST00000466990 990 ntBASIC17.12■□□□□ 0.33
PCDH9Q9HC56 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 AC010654.1-201ENST00000615722 808 ntBASIC17.12■□□□□ 0.33
PCDH9Q9HC56 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.12■□□□□ 0.33
PCDH9Q9HC56 AC024909.3-201ENST00000611513 2257 ntBASIC17.12■□□□□ 0.33
PCDH9Q9HC56 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 AL603832.2-201ENST00000566195 2125 ntBASIC17.11■□□□□ 0.33
PCDH9Q9HC56 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 LINC01144-201ENST00000626198 1710 ntBASIC17.11■□□□□ 0.33
PCDH9Q9HC56 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.11■□□□□ 0.33
PCDH9Q9HC56 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 OR7E47P-204ENST00000575924 449 ntBASIC17.11■□□□□ 0.33
PCDH9Q9HC56 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 PGR-209ENST00000617858 2816 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 AC105917.1-201ENST00000506637 2539 ntBASIC17.11■□□□□ 0.33
PCDH9Q9HC56 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.11■□□□□ 0.33
PCDH9Q9HC56 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms