Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM4P67936 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
TPM4P67936 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.65■□□□□ 0.58
TPM4P67936 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.65■□□□□ 0.58
TPM4P67936 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TPM4P67936 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC18.65■□□□□ 0.58
TPM4P67936 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM4P67936 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TPM4P67936 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.65■□□□□ 0.58
TPM4P67936 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TPM4P67936 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.64■□□□□ 0.58
TPM4P67936 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
TPM4P67936 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.64■□□□□ 0.58
TPM4P67936 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
TPM4P67936 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.58
TPM4P67936 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TPM4P67936 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.64■□□□□ 0.58
TPM4P67936 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TPM4P67936 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM4P67936 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.64■□□□□ 0.57
TPM4P67936 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.64■□□□□ 0.57
TPM4P67936 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
TPM4P67936 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM4P67936 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.64■□□□□ 0.57
TPM4P67936 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM4P67936 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM4P67936 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM4P67936 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.64■□□□□ 0.57
TPM4P67936 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM4P67936 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TPM4P67936 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.64■□□□□ 0.57
TPM4P67936 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC18.64■□□□□ 0.57
TPM4P67936 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.64■□□□□ 0.57
TPM4P67936 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.64■□□□□ 0.57
TPM4P67936 AL136038.3-201ENST00000561909 1096 ntBASIC18.64■□□□□ 0.57
TPM4P67936 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM4P67936 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.64■□□□□ 0.57
TPM4P67936 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.64■□□□□ 0.57
TPM4P67936 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM4P67936 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM4P67936 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM4P67936 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM4P67936 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.64■□□□□ 0.57
TPM4P67936 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM4P67936 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC18.64■□□□□ 0.57
TPM4P67936 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TPM4P67936 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.64■□□□□ 0.57
TPM4P67936 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
TPM4P67936 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC18.64■□□□□ 0.57
TPM4P67936 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM4P67936 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC18.63■□□□□ 0.57
TPM4P67936 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM4P67936 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM4P67936 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC18.63■□□□□ 0.57
TPM4P67936 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TPM4P67936 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TPM4P67936 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.63■□□□□ 0.57
TPM4P67936 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
TPM4P67936 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM4P67936 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM4P67936 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.63■□□□□ 0.57
TPM4P67936 AC004817.3-201ENST00000602957 2129 ntBASIC18.63■□□□□ 0.57
TPM4P67936 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM4P67936 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.63■□□□□ 0.57
TPM4P67936 AP000867.4-201ENST00000641616 219 ntBASIC18.63■□□□□ 0.57
TPM4P67936 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM4P67936 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.63■□□□□ 0.57
TPM4P67936 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC18.63■□□□□ 0.57
TPM4P67936 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM4P67936 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC18.63■□□□□ 0.57
TPM4P67936 SIGLEC16-201ENST00000599858 1437 ntBASIC18.63■□□□□ 0.57
TPM4P67936 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM4P67936 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM4P67936 PCDHA3-202ENST00000532566 4594 ntBASIC18.63■□□□□ 0.57
TPM4P67936 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.63■□□□□ 0.57
TPM4P67936 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM4P67936 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC18.63■□□□□ 0.57
TPM4P67936 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM4P67936 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM4P67936 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TPM4P67936 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC18.63■□□□□ 0.57
TPM4P67936 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC18.63■□□□□ 0.57
TPM4P67936 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC18.63■□□□□ 0.57
TPM4P67936 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TPM4P67936 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
TPM4P67936 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC18.63■□□□□ 0.57
TPM4P67936 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM4P67936 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.62■□□□□ 0.57
TPM4P67936 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM4P67936 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TPM4P67936 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM4P67936 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM4P67936 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM4P67936 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM4P67936 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM4P67936 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC18.62■□□□□ 0.57
TPM4P67936 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM4P67936 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TPM4P67936 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TPM4P67936 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms