Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AL022326.1-202ENST00000641533 845 ntBASIC13.62□□□□□ -0.23
CDX1P47902 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC13.62□□□□□ -0.23
CDX1P47902 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC13.62□□□□□ -0.23
CDX1P47902 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CDX1P47902 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CDX1P47902 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CDX1P47902 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC13.62□□□□□ -0.23
CDX1P47902 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CDX1P47902 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
CDX1P47902 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CDX1P47902 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
CDX1P47902 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CDX1P47902 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC13.62□□□□□ -0.23
CDX1P47902 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CDX1P47902 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC13.61□□□□□ -0.23
CDX1P47902 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 AC138035.3-201ENST00000622706 2791 ntBASIC13.61□□□□□ -0.23
CDX1P47902 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC13.61□□□□□ -0.23
CDX1P47902 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
CDX1P47902 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 AMT-233ENST00000636522 1620 ntTSL 2 BASIC13.61□□□□□ -0.23
CDX1P47902 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC13.61□□□□□ -0.23
CDX1P47902 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CDX1P47902 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
CDX1P47902 AC006058.4-201ENST00000624016 1670 ntBASIC13.61□□□□□ -0.23
CDX1P47902 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
CDX1P47902 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 AC003669.1-201ENST00000334569 611 ntBASIC13.61□□□□□ -0.23
CDX1P47902 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC13.61□□□□□ -0.23
CDX1P47902 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC13.61□□□□□ -0.23
CDX1P47902 AL020989.1-201ENST00000422979 469 ntBASIC13.61□□□□□ -0.23
CDX1P47902 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
CDX1P47902 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC13.61□□□□□ -0.23
CDX1P47902 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC13.61□□□□□ -0.23
CDX1P47902 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC13.61□□□□□ -0.23
CDX1P47902 OR7E14P-202ENST00000530490 1290 ntBASIC13.61□□□□□ -0.23
CDX1P47902 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC13.61□□□□□ -0.23
CDX1P47902 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
CDX1P47902 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC13.61□□□□□ -0.23
CDX1P47902 PNMT-203ENST00000581428 677 ntTSL 2 BASIC13.61□□□□□ -0.23
CDX1P47902 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC13.61□□□□□ -0.23
CDX1P47902 PRKN-208ENST00000610470 531 ntTSL 2 BASIC13.61□□□□□ -0.23
CDX1P47902 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC13.61□□□□□ -0.23
CDX1P47902 PRKN-209ENST00000612485 225 ntTSL 5 BASIC13.61□□□□□ -0.23
CDX1P47902 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC13.61□□□□□ -0.23
CDX1P47902 AC148477.8-201ENST00000624298 468 ntBASIC13.61□□□□□ -0.23
CDX1P47902 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
CDX1P47902 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
CDX1P47902 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
CDX1P47902 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
CDX1P47902 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC13.61□□□□□ -0.23
CDX1P47902 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC13.61□□□□□ -0.23
CDX1P47902 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
CDX1P47902 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CDX1P47902 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
CDX1P47902 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC13.61□□□□□ -0.23
CDX1P47902 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC13.6□□□□□ -0.23
CDX1P47902 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
CDX1P47902 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
CDX1P47902 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
CDX1P47902 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC13.6□□□□□ -0.23
CDX1P47902 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC13.6□□□□□ -0.23
CDX1P47902 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 SLC9A7P1-201ENST00000554295 3311 ntBASIC13.6□□□□□ -0.23
CDX1P47902 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CDX1P47902 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDX1P47902 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC13.6□□□□□ -0.23
CDX1P47902 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC13.6□□□□□ -0.23
CDX1P47902 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms