Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.87■□□□□ 0.45
TNFSF9P41273 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TNFSF9P41273 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TNFSF9P41273 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TNFSF9P41273 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
TNFSF9P41273 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
TNFSF9P41273 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
TNFSF9P41273 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.86■□□□□ 0.45
TNFSF9P41273 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
TNFSF9P41273 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.86■□□□□ 0.45
TNFSF9P41273 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.86■□□□□ 0.45
TNFSF9P41273 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
TNFSF9P41273 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
TNFSF9P41273 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.86■□□□□ 0.45
TNFSF9P41273 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.86■□□□□ 0.45
TNFSF9P41273 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.86■□□□□ 0.45
TNFSF9P41273 AC004449.1-201ENST00000564240 433 ntBASIC17.86■□□□□ 0.45
TNFSF9P41273 AC026150.2-201ENST00000564693 1156 ntBASIC17.86■□□□□ 0.45
TNFSF9P41273 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.86■□□□□ 0.45
TNFSF9P41273 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.86■□□□□ 0.45
TNFSF9P41273 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.86■□□□□ 0.45
TNFSF9P41273 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.86■□□□□ 0.45
TNFSF9P41273 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
TNFSF9P41273 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.86■□□□□ 0.45
TNFSF9P41273 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TNFSF9P41273 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.86■□□□□ 0.45
TNFSF9P41273 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.86■□□□□ 0.45
TNFSF9P41273 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.85■□□□□ 0.45
TNFSF9P41273 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.85■□□□□ 0.45
TNFSF9P41273 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
TNFSF9P41273 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TNFSF9P41273 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TNFSF9P41273 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TNFSF9P41273 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
TNFSF9P41273 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
TNFSF9P41273 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.85■□□□□ 0.45
TNFSF9P41273 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TNFSF9P41273 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.85■□□□□ 0.45
TNFSF9P41273 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
TNFSF9P41273 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC17.85■□□□□ 0.45
TNFSF9P41273 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.85■□□□□ 0.45
TNFSF9P41273 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TNFSF9P41273 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
TNFSF9P41273 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.85■□□□□ 0.45
TNFSF9P41273 ALG1L8P-201ENST00000533887 760 ntBASIC17.85■□□□□ 0.45
TNFSF9P41273 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.85■□□□□ 0.45
TNFSF9P41273 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
TNFSF9P41273 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.85■□□□□ 0.45
TNFSF9P41273 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.85■□□□□ 0.45
TNFSF9P41273 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.85■□□□□ 0.45
TNFSF9P41273 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
TNFSF9P41273 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
TNFSF9P41273 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.84■□□□□ 0.45
TNFSF9P41273 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TNFSF9P41273 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC17.84■□□□□ 0.45
TNFSF9P41273 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TNFSF9P41273 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.84■□□□□ 0.45
TNFSF9P41273 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
TNFSF9P41273 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.84■□□□□ 0.45
TNFSF9P41273 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
TNFSF9P41273 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TNFSF9P41273 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TNFSF9P41273 LINC01144-201ENST00000626198 1710 ntBASIC17.84■□□□□ 0.45
TNFSF9P41273 AC005622.1-201ENST00000636801 1703 ntBASIC17.84■□□□□ 0.45
TNFSF9P41273 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TNFSF9P41273 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.84■□□□□ 0.45
TNFSF9P41273 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TNFSF9P41273 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TNFSF9P41273 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.84■□□□□ 0.45
TNFSF9P41273 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TNFSF9P41273 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
TNFSF9P41273 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
TNFSF9P41273 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TNFSF9P41273 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TNFSF9P41273 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.84■□□□□ 0.45
TNFSF9P41273 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.84■□□□□ 0.45
TNFSF9P41273 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.84■□□□□ 0.45
TNFSF9P41273 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.84■□□□□ 0.45
TNFSF9P41273 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms