Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA1O95477 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC13.92□□□□□ -0.18
ABCA1O95477 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC13.92□□□□□ -0.18
ABCA1O95477 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC13.92□□□□□ -0.18
ABCA1O95477 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC13.92□□□□□ -0.18
ABCA1O95477 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
ABCA1O95477 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA1O95477 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA1O95477 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA1O95477 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA1O95477 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA1O95477 AL161772.1-201ENST00000610494 4412 ntBASIC13.92□□□□□ -0.18
ABCA1O95477 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA1O95477 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA1O95477 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA1O95477 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC13.92□□□□□ -0.18
ABCA1O95477 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA1O95477 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA1O95477 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA1O95477 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA1O95477 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA1O95477 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA1O95477 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC13.92□□□□□ -0.18
ABCA1O95477 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC13.92□□□□□ -0.18
ABCA1O95477 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC13.92□□□□□ -0.18
ABCA1O95477 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA1O95477 AC241585.1-201ENST00000433527 519 ntBASIC13.92□□□□□ -0.18
ABCA1O95477 ACA64.2-201ENST00000459014 129 ntBASIC13.92□□□□□ -0.18
ABCA1O95477 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC13.92□□□□□ -0.18
ABCA1O95477 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
ABCA1O95477 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA1O95477 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
ABCA1O95477 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 AC022144.1-201ENST00000602255 1580 ntBASIC13.91□□□□□ -0.18
ABCA1O95477 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC13.91□□□□□ -0.18
ABCA1O95477 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC13.91□□□□□ -0.18
ABCA1O95477 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC13.91□□□□□ -0.18
ABCA1O95477 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
ABCA1O95477 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 AC012569.1-201ENST00000591191 1524 ntBASIC13.91□□□□□ -0.18
ABCA1O95477 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC13.91□□□□□ -0.18
ABCA1O95477 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC13.91□□□□□ -0.18
ABCA1O95477 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC13.91□□□□□ -0.18
ABCA1O95477 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC13.91□□□□□ -0.18
ABCA1O95477 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
ABCA1O95477 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC13.91□□□□□ -0.18
ABCA1O95477 CASK-202ENST00000378158 3848 ntTSL 5 BASIC13.91□□□□□ -0.18
ABCA1O95477 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC13.91□□□□□ -0.18
ABCA1O95477 LY6E-204ENST00000519546 971 ntTSL 2 BASIC13.91□□□□□ -0.18
ABCA1O95477 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC13.91□□□□□ -0.18
ABCA1O95477 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC13.91□□□□□ -0.18
ABCA1O95477 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC13.91□□□□□ -0.18
ABCA1O95477 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC13.91□□□□□ -0.18
ABCA1O95477 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 AP001094.4-201ENST00000579008 2176 ntBASIC13.91□□□□□ -0.18
ABCA1O95477 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
ABCA1O95477 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC13.91□□□□□ -0.18
ABCA1O95477 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC13.9□□□□□ -0.18
ABCA1O95477 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA1O95477 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA1O95477 COX5BP8-201ENST00000416911 349 ntBASIC13.9□□□□□ -0.18
ABCA1O95477 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC13.9□□□□□ -0.18
ABCA1O95477 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC13.9□□□□□ -0.18
ABCA1O95477 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC13.9□□□□□ -0.18
ABCA1O95477 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
ABCA1O95477 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC13.9□□□□□ -0.18
ABCA1O95477 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA1O95477 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
ABCA1O95477 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA1O95477 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
ABCA1O95477 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC13.9□□□□□ -0.18
ABCA1O95477 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA1O95477 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA1O95477 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
ABCA1O95477 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC13.9□□□□□ -0.18
ABCA1O95477 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA1O95477 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC13.9□□□□□ -0.18
ABCA1O95477 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC13.9□□□□□ -0.18
ABCA1O95477 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA1O95477 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA1O95477 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
ABCA1O95477 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
ABCA1O95477 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms