Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
RNF40O75150 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
RNF40O75150 AC092384.3-202ENST00000564646 2873 ntBASIC17.97■□□□□ 0.47
RNF40O75150 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
RNF40O75150 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
RNF40O75150 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
RNF40O75150 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF40O75150 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC17.96■□□□□ 0.47
RNF40O75150 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF40O75150 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.96■□□□□ 0.47
RNF40O75150 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.96■□□□□ 0.47
RNF40O75150 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RNF40O75150 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.96■□□□□ 0.47
RNF40O75150 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
RNF40O75150 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.96■□□□□ 0.47
RNF40O75150 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RNF40O75150 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
RNF40O75150 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF40O75150 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF40O75150 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF40O75150 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RNF40O75150 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF40O75150 AC103564.2-201ENST00000432853 1299 ntBASIC17.96■□□□□ 0.47
RNF40O75150 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.96■□□□□ 0.47
RNF40O75150 DNAJB3-202ENST00000449667 1266 ntBASIC17.96■□□□□ 0.47
RNF40O75150 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC17.96■□□□□ 0.47
RNF40O75150 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
RNF40O75150 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.96■□□□□ 0.47
RNF40O75150 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.96■□□□□ 0.47
RNF40O75150 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.96■□□□□ 0.47
RNF40O75150 AC027796.2-201ENST00000575326 344 ntBASIC17.96■□□□□ 0.47
RNF40O75150 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.96■□□□□ 0.47
RNF40O75150 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.96■□□□□ 0.47
RNF40O75150 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
RNF40O75150 AC144831.1-201ENST00000573312 2656 ntBASIC17.96■□□□□ 0.47
RNF40O75150 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF40O75150 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF40O75150 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF40O75150 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
RNF40O75150 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF40O75150 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF40O75150 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.96■□□□□ 0.47
RNF40O75150 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
RNF40O75150 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.46
RNF40O75150 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.96■□□□□ 0.46
RNF40O75150 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
RNF40O75150 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
RNF40O75150 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.96■□□□□ 0.46
RNF40O75150 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
RNF40O75150 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
RNF40O75150 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF40O75150 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF40O75150 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
RNF40O75150 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
RNF40O75150 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.95■□□□□ 0.46
RNF40O75150 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.95■□□□□ 0.46
RNF40O75150 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC17.95■□□□□ 0.46
RNF40O75150 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF40O75150 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.95■□□□□ 0.46
RNF40O75150 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.95■□□□□ 0.46
RNF40O75150 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.95■□□□□ 0.46
RNF40O75150 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.95■□□□□ 0.46
RNF40O75150 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.95■□□□□ 0.46
RNF40O75150 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.95■□□□□ 0.46
RNF40O75150 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC17.95■□□□□ 0.46
RNF40O75150 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.95■□□□□ 0.46
RNF40O75150 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RNF40O75150 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.95■□□□□ 0.46
RNF40O75150 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.95■□□□□ 0.46
RNF40O75150 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RNF40O75150 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF40O75150 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
RNF40O75150 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF40O75150 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF40O75150 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF40O75150 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF40O75150 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.95■□□□□ 0.46
RNF40O75150 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF40O75150 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
RNF40O75150 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC17.95■□□□□ 0.46
RNF40O75150 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC17.95■□□□□ 0.46
RNF40O75150 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF40O75150 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF40O75150 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.95■□□□□ 0.46
RNF40O75150 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
RNF40O75150 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
RNF40O75150 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC17.94■□□□□ 0.46
RNF40O75150 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.94■□□□□ 0.46
RNF40O75150 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.94■□□□□ 0.46
RNF40O75150 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
RNF40O75150 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms