Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC13.46□□□□□ -0.26
FOXA2Q9Y261 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
FOXA2Q9Y261 AL365203.3-201ENST00000609742 2057 ntBASIC13.46□□□□□ -0.26
FOXA2Q9Y261 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC13.46□□□□□ -0.26
FOXA2Q9Y261 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
FOXA2Q9Y261 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC13.46□□□□□ -0.26
FOXA2Q9Y261 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC13.46□□□□□ -0.26
FOXA2Q9Y261 AC005052.1-201ENST00000625181 2492 ntBASIC13.46□□□□□ -0.26
FOXA2Q9Y261 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC13.46□□□□□ -0.26
FOXA2Q9Y261 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC13.46□□□□□ -0.26
FOXA2Q9Y261 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 HLA-A-201ENST00000376802 1334 ntBASIC13.45□□□□□ -0.26
FOXA2Q9Y261 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 AP002414.3-201ENST00000589352 1468 ntBASIC13.45□□□□□ -0.26
FOXA2Q9Y261 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 FDX1P1-201ENST00000449115 551 ntBASIC13.45□□□□□ -0.26
FOXA2Q9Y261 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 AC092910.1-201ENST00000482027 1129 ntBASIC13.45□□□□□ -0.26
FOXA2Q9Y261 RPS15P9-201ENST00000494093 319 ntBASIC13.45□□□□□ -0.26
FOXA2Q9Y261 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 AC079776.4-201ENST00000511039 504 ntBASIC13.45□□□□□ -0.26
FOXA2Q9Y261 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC13.45□□□□□ -0.26
FOXA2Q9Y261 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 CICP6-201ENST00000457191 2729 ntBASIC13.44□□□□□ -0.26
FOXA2Q9Y261 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 AC073621.1-201ENST00000392730 636 ntBASIC13.44□□□□□ -0.26
FOXA2Q9Y261 PTCHD3P3-201ENST00000403073 906 ntBASIC13.44□□□□□ -0.26
FOXA2Q9Y261 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 AC012640.2-201ENST00000561606 901 ntBASIC13.44□□□□□ -0.26
FOXA2Q9Y261 AC091167.2-201ENST00000579581 588 ntBASIC13.44□□□□□ -0.26
FOXA2Q9Y261 MIR4492-201ENST00000581627 80 ntBASIC13.44□□□□□ -0.26
FOXA2Q9Y261 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
FOXA2Q9Y261 SIGLEC29P-201ENST00000599873 1114 ntBASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms